Array 1 413576-413964 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXCC01000001.1 Pseudomonas aeruginosa strain P1885 IPC1150_1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 413576 28 100.0 32 ............................ AGCGTGTTGAACCGTTGAGTTCGGTCAACTTC 413636 28 100.0 32 ............................ ATTTGGCGAGGTTGGTGCTTCTATAGGTCGGT 413696 28 100.0 32 ............................ AGCCACAACGGCGAGGCACCAAGAAGGATCGA 413756 28 100.0 32 ............................ GTCACCAGTTCCAGAACATCGGGCGCGTATCG 413816 28 100.0 32 ............................ ATCAGATGCATAGAACCGCTCAAGAGCCGTCG 413876 28 100.0 32 ............................ ACGGTCCCTTGCTCGCGCCGACCAAGCGCCCC 413936 28 82.1 0 ......................G.CTTC | C [413956] ========== ====== ====== ====== ============================ ================================ ================== 7 28 97.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCGCTTCCCGCACAACGCCACGCTGTACCTCGACACCCAGGCGCCACCCGGCCAGTTGTTCGAAAGTGCGAAAACGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCACATCCCAGGCGCGACGCCCCCGGCTTGGCCGGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTCGCGCGCGAACGGCGAAGCTCACCGCCCGTCCCGCTCATCACGAAATAGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : CCACTCGGACTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGAAGACAATGCCGTTCACACCCGGCTTTCCCCTGACGAAACGAATAGCCTGTCCGTCTCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGTATGAGTGGGATGGACCTCAAGCGCCGTCGCGTCGTGCAAGGCCTGGGCGCTGGACTGCTGTTGCCGGCGCTGGGAGCGCCGGCGCTGATCGCCTCGCCCAGGGCGCGGCCGAAGCTGACCGATGGCGTGCAATCCGGCGACGTGCAGGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGCCCGGCGCGGATGATCGTCGAATGGGACACCCGTAGCGTCTTCAGCGAGCCGCGCCGGCTAGTCTCGCCGGTCACCGACGAGCGCCTCGACTACACCGCGCGCATCGACCTGCGTGGCTTGCCTGCCGACCAGTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 930162-929654 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXCC01000001.1 Pseudomonas aeruginosa strain P1885 IPC1150_1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 930161 28 100.0 32 ............................ GATAGGCACCGGCAGCAGTGGTCGCACCGGTC 930101 28 100.0 32 ............................ TACTCGCGGATCGTTCGGGAACGAGCGGTTGA 930041 28 100.0 32 ............................ ACGTAGAAGATGGCCGGAATGCCGCCCTTGGT 929981 28 100.0 32 ............................ TTCTCACCCTTGATTTCACTGACCGGGAGGAC 929921 28 100.0 32 ............................ AAGGTGCAATCGCTTCAGGAAGCGTTCAACGC 929861 28 100.0 32 ............................ GAGGCGAAAGCTCGTGCCGATGCCGATGCGGC 929801 28 100.0 32 ............................ TCGGGGCTATGCCCATGTCTCTGTCGTGATGT 929741 28 100.0 32 ............................ TGGAACGACGGCAAGGTGACGGCGCACCACGG 929681 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGCGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTTGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCAGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCATTTTTCAGACGATTTCTTACGCCCTTATAAATCAGCAAGTTAGGAGGCCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCAAGAAAGAACAGAATGGCCAGCCTGCGCCGTTTATTGCCGTGTAGTCCCGTAGAGCGAATACCGCCACAGGCGATATCCGCCGATACCCCGGATACGCGGCGGATAACCGCAGGCGGTTATTCGCCCTACGGATCAGGGCTTCGGCATATGGAGGTCAGGCCTGCACGAAGTCATGCCTGACCTCCAAGTGACAGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGCGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAGGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGGACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACGAAAAACAGCTTGACCAGCAACCATGAAGCCCGCTCGAACATCCCTTAGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1014750-1015437 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXCC01000001.1 Pseudomonas aeruginosa strain P1885 IPC1150_1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1014750 28 100.0 32 ............................ GCCCAGCACGGCGTGCCGGGCAAGTACGATGA 1014810 28 100.0 32 ............................ ATTATCAAAACGATTCAGAGAGCAGCTAAATT 1014870 28 100.0 32 ............................ TGCTCGGCCTGCGCCTTGGTCACGTCTGCCAC 1014930 28 100.0 32 ............................ TAGCTGGTGAGGCCTGGGCGCGGGTGTATTAC 1014990 28 100.0 32 ............................ AGTTATGTGCAGTACTTCGGAGGGAGCGCTTC 1015050 28 100.0 32 ............................ TGTTCGTTGCGGATATCGCTGCACGCGATGCC 1015110 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 1015170 28 100.0 32 ............................ GACAAAGTACAGCGATACACCCGCTCACACGG 1015230 28 100.0 32 ............................ TTCTCTTTCGGCTCGAACAGTGCAAGCCACAC 1015290 28 100.0 32 ............................ ATCTGCGGTAACCGTCTCGTTGCGCGCGGCAA 1015350 28 100.0 32 ............................ TGGACGTTCTGCAGCCAGTCGAATTCGTCGTA 1015410 28 96.4 0 .............C.............. | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGCTTTCCGCACAACGCCACGCTGTATCTCGACACCCAGGCGCCGCCCGGCCAGTTGTTCGAGAGCGCGAAAACGCGCCTGAAGTGGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCTCCGTCCCAAGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGAGGTGATCCCTTCGAGGCCCACTCGCGCGCGTGAACGGCGAAACTCACCGCCCGTTCCGCTCATCACGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTTACGTCCTTTAAAATCAATAACTTACCAAGACCCGAAAAAAGAGGGTTCCAGACCAGGAAAGCCCGGTATTTCTTTTTTCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : AAACAGAGACTTCTCGCCCACATCGATGAGAAGGCCCAAGAAAAACGGCGCTTCCCTTGCTTAAGGAAGCGCCGTTTTTCTTGCTGGCATTAAGACGAATGCCGGCCATTTCAAGCGCTACGCGTGGGCTTCGGCGCTCAGGCCTGGGCCAGCTCCGCATCGTGTGCGATCAGGGCGACCAGTGCGTTCTGCTGACGGTGGGTCAGCTGGCGGAAACGCTGCAGCAGCTCGCGCTCGTGCAGGCTGAGTTCCGGGCTGTCCAGGCGAACACCGAGATTGTCTTGCAGCGCCCCTTCCTGGAGCAGGCTCTGCTCGAGTCGGGCGATGATCTCGGAGTTCATGCTGCGATGATGGCTGCGAGCGACTTCTGCGATCTGCTCACGCATGCCCTCGGGCAGACGAACGACGAATTTGTCAGCGGTACGGCTGGAGTAGGTAGGAGTTGCCTGTTTCAGTGGGCGCATACATTGAACCTGTAGAGTCAGGGAAAAGCGGTGCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13816-13248 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXCC01000013.1 Pseudomonas aeruginosa strain P1885 IPC1150_13.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13815 28 100.0 32 ............................ CCAGCGACTACGGGTTCGGGTAATGGTTATAG 13755 28 100.0 32 ............................ ATCGCCGCCGCCCTGCTTCACCCAATCCGCCG 13695 28 100.0 32 ............................ TGCTGCTCGGTGGCGTTGACCAGCTTCCATAC 13635 28 100.0 32 ............................ GGGCGGAGGGTCAATCTGCCGCATCCCTTCAC 13575 28 100.0 32 ............................ TTACAGCCACCTTGCAGACCCGTCCCGCCACC 13515 28 100.0 32 ............................ TGACAGATGATGAACTTGAACGCCGAATCGCT 13455 28 100.0 32 ............................ GGACCTACTTCTCGACGCCCAGTTCGATGGCG 13395 28 100.0 32 ............................ TGAAAGACCGCGAAATCAAGTCGCGCTACGAC 13335 28 100.0 32 ............................ AGAGAGTCGAGTTCCAGCACCTGGCCCTTGGA 13275 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTTCCCGTGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCAGGCCGGSGGCTTTGTGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGCCCTCGCGAAACGGTCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTAGGAGGCCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGGCTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : TCGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTGTCTCTCCGGCAACTCCGCACACCTGTCAGCCATGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGGGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCTCCGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 320-937 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXCC01000012.1 Pseudomonas aeruginosa strain P1885 IPC1150_12.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 320 28 100.0 32 ............................ GTGGGGATCGGCGAGGACCGGCTAACGATCAG 380 28 100.0 32 ............................ TTCAAGGTCAGCCAGTTCAACCCGCTGCGCCA 440 28 100.0 32 ............................ AGCCGGCGGCGTTGCTCGTTGGCTCGCCTGCT 500 28 100.0 32 ............................ ACAAGGAGCAGTGCGAATCGAACATCACACTC 560 28 100.0 32 ............................ AAAGGAAAAACAATGACTTACGTTCTCTACGG 620 28 100.0 32 ............................ TGGTCGATCAGGCGCAGCACAAAGTCGAGTTT 680 28 100.0 32 ............................ TGGCCTCGATCCTCCGTTTCAACGGCGACCGC 740 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGCGGTCCAGGCG 800 28 100.0 22 ............................ TTACCTTTAAAAGGCCTTTTAG Deletion [850] 850 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCCTAGGGCGA 910 28 78.6 0 T.........AC.....TC..C...... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 97.4 31 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CAGAATGCCTTCATCGAGTCGTTCAACGGTAAGTTCCGGGACGAATGCCTCAATGAGCACTGGTTCTGTTCGCTGGCCGAAGCGAGAATCCGCATCGCGGCCTGGCGGCGGGATTACAACGAACACCGACCGCACAGCGCGATTGGCAATCTCACCCCGGCAGAATTTGCTGCAAGTTGGCGAACTCGCCAGCAGCAGCTGAAGCAGGAAAAATTAATATCAACCCCAGGGCCTACTAACTAGGCAGCGGTACTAAAACTGGGGACAGGTCATAGGCAGCTAAGAAAAAGCGGCACATGGATGGCGGCTTGAACAACGCG # Right flank : ACGGCCAGCAGACCTGAAGTATCGATTGATGTGGTTCGCTCTCGGCCGGGGCCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGATTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCTCGAAGGTCTTCCGCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10090-9462 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXCC01000012.1 Pseudomonas aeruginosa strain P1885 IPC1150_12.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10089 28 100.0 32 ............................ ACCCCACCGGCGCGGGCGGTTGCTTTCACGAT 10029 28 96.4 32 C........................... TGACCGAAACTATCCTTACAAGGATCATCCTC 9969 28 100.0 32 ............................ TGGCTCTGCACAGCGACAGCCAGCCGGCAGAC 9909 28 100.0 32 ............................ CAGGTTCCGTCGCACGCAATGAAGTTCATTTC 9849 28 100.0 32 ............................ GACCGCGTTACCCGTGCCGGGGTGCTGCCAAC 9789 28 100.0 32 ............................ TGGGATGTAGAGCGCCTCGAACTGCTCTGTCA 9729 28 100.0 32 ............................ GATACCGCGGCGTTGGCATGGGCGTCGGCGGT 9669 28 100.0 32 ............................ CCGAGAGGGCTAGTCGTTGCCACCGGGGAACG 9609 28 100.0 32 ............................ GTTCGGGTCGCGTGGCAACCGGCCCTCGGCGT 9549 28 100.0 32 ............................ TGCGCCCTGCTTTCGGTAGGAAAATCAGGCAG 9489 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGCGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCCAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGATGATTTCTTACGCCCTTATAAATCAGTAAGTTAGGAGACCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGTTTCACTGCCGTCCAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCCTGGAAGCTCACGCTCCTCATACAGACGCAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCGGTATTCGATAGATCCGATAGGGACAAGGCCACGGTCAGCATGGACGACATCTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //