Array 1 3432-3220 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCFU01000054.1 Lactobacillus helveticus strain IMAU50151 Scaffold54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3431 29 100.0 32 ............................. TGTGGTCATCTTGTCTCGTTGATCTTTTATCA 3370 29 100.0 32 ............................. AGCTCTTTAAAAGAAACTAATGGAGCTAGTGA 3309 29 100.0 32 ............................. AAAGAATTTACAGGATCAAAAGCATTTTTGAA 3248 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTATTCTCCACGTATGTGGAGGTGATCCC # Left flank : GCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTGAGTTAAAGCAGCATCCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTAATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATTGCTAACAGCATCGGCTTGAACGTGATTAGTAGAAACAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAAAATTTAAAATGAGTAGAGGATATAAATAAAAAAGAATAAAATAAATGGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : AAAAAAACGAGACAATACATATTATGTGTCTCCTTTAGAACACGATTTACTGATAAATGATGATGCAGCTCATCAGCTCATGCTTTAAAAGAATTACCGGCAAATTCAGTTGATTTGATATTTACGTCACCACCTTATTACAATGCTAAAACAGAATATAGTGAGTTCTTAACATATGATAAATATTTGGCTTTTATCAAAGAAATTGTTGAAGAAGCAACCAGAGTTTTAATACCAGGGAAATTTTTTGTAATGGATTCATCTCCTGTATTAATACCTCGAATTGATAGAAATCATTCATCTACGAGATTAACTGTACCATATGATATTCATAAAATCTTTATGGATTTGGGCTATGAATTTATTGACGACATATATTGGGTTAAACCAGAGGGTGCTGGCTGGTCAGCTGGAAGAGGCAGAAGGTTTGCAGCTGATCGTCATCCTATGCAATATAAAGCTGTTCCAGTTACTGAAAATATTATGGTATATAGGAAGAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2703-3713 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCFU01000066.1 Lactobacillus helveticus strain IMAU50151 Scaffold66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2703 29 100.0 32 ............................. ATGTGCTCTTTTACGAGGTTTGCTTTTTACTG 2764 29 100.0 32 ............................. TAGCATCATATTGGTCAGTCTTCTTTAAATTA 2825 29 100.0 32 ............................. AGTAACAACGATCGTAATCGGTTGCGTCCACC 2886 29 100.0 32 ............................. CCGTTTTGATGTTTACATATGAAAGCAAAAAA 2947 29 96.6 32 ............................C CTTGTGGTTCTGTCTGGCAAGTGTTTGGCTTT 3008 29 96.6 32 ............................C TTGATTAGCCATGTCGCTTATCTGCTCAAAGC 3069 29 96.6 32 ............................C TAACTGATAAAGAAAAAACTACGATGCATCAA 3130 29 100.0 33 ............................. AAGTTGATCCATCTTTTCGTCTTGTTTTTGACT 3192 29 96.6 32 ............................C GTTTGCCATAAACGACAGTTCCCTTACTTTTG 3253 29 100.0 32 ............................. AGTAAGATTAAAGGAGCCTAAAAAATGAAAGA 3314 29 96.6 32 ............................C ATCCTTGCTACGTTGTGTGTGCTTTTTATGCA GATG [3332] 3379 29 100.0 32 ............................. GTAAAGTGTTTGAAGTCTAGATGGTCATATGA 3440 29 100.0 32 ............................. GTAAAGTGTTTGAAGTCTAGATGGTCATATGA 3501 29 96.6 32 ............................C ATGGCTACCTCTCAGCCACAGGATACCAAAAG 3562 29 100.0 33 ............................. AGTCGCTGTTTTCTGCTACCCTTAGCATTCTGG 3624 29 96.6 32 ............................C TAGCAATAAAATCCGCAGTCTAGCAACTAAGG 3685 29 96.6 0 ...........................A. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.4 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATATATATCTAAAAGTAAATGTGAAAGATTTTATCGACTAATTAAAACTGATTATGAAATTCCAACGCATATTTCTAAAATTACGCAATTAACATCAGAGAAATTGAATCAAAGTGGTGTTGAATTATTTGATGCGCTTGAAGACTTAAAGAAGTTTTTAGCTGATAGATTAATAGTAGGTTATAATTTAAATTTTGATATTAATTTCCTGAATCGTGACTATCAAAAATATAATAATTCCCATATCTTGAATAATTTAAAGGATATATTGCCAATAATTAAGAATAAAAATAAGTTTATTGATAATTATAAATTAAATACAGTTCTTAAAAATTATGGTATAAAAAATGCTGAACCTCATAATGCTTTGTCAGATGCGTGTGCCACATTGGATTTAATTATTAAGTTGGTAGAGCAAGGCAGCTTTTAAAGATAATGAAAGTGATTAAAAATAGAGATTTAGTATTTTGAAAACGGCGATAGAATGGGATTTATTTACT # Right flank : TATTTTTGCTATAAAACTGCTGAAAAAATATTGTGTGGAAAATGAAATCTATTTTGATACTTGGTATAAATTTGCAAAATGTTTTGGAATACCTAAAGAGTGTCACTACTTACTAGAATTGATTGCATGAGGTAAGAACCATGAGTAGGCTAATACGCCGCAGATCTATCACAAAATCTATTAAGGCTGAAACAACCGCAAAATATAAAAGGGAATTAAAAAAGAAAATTTTGCCTGGATACGGTAAAAAAGGAGCTGGGGTTGTAAAAGATCCTAAAAGAAGTATACGAAATGCTATTTACAATAGGACAACTTTAGATACAAGAAAAATTAGCAAATCTAAAAAGAAAGATTCAACCGATGATAATAAGCTAGGTTGTGGGTGTGCTACAGCTCTTGTTTTCTTCGGTGCTTTTGTTGGTCAAATGATTGGTGGCAATGTAGGTGGAGTAATTGGTGTAGTTCTTATGCTTATAATTGCTATTTGGGGAATGATATAG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2718-2868 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCFU01000084.1 Lactobacillus helveticus strain IMAU50151 Scaffold84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2718 29 100.0 32 ............................. GTTAACGCACAAACAAAGCTAGATCTCTTATA 2779 29 100.0 32 ............................. AGCTCCTAACGCACCCATAGCGGCATTTGAAA 2840 29 93.1 0 ...........................TA | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTATTCTCCACGTATGTGGAGGTGATCCC # Left flank : GTAAAGCATACTTATCTTCAAGAACTTCATAGATGGCATAATCACGTACTGTTTGGTAGACAGTTAATGGATTGTGCATCCAGTTTCCGTCTTTGCCGTATTCTTTTACAAGGTGCCTGCCTAATTCGGGCTGCTTAATAGCTAATGCGGTAAAATCATCATATGTTGTGCAATTATAGTTTAATTCAGTCATTAAAAAAGTCCTTTCTATTTATAAGCAATTAAAAAACCTTCACAACCTAAGTCGCTAATTGGTAAAATGGTTTTATTCATTAAATTAACATCATAGATATGATCGGGATCATTACTATCGGTATATTCGGCTGTATTTATGCGTGAATCACAAAGCCAGATAAGTTGATAGTTTTTTGTTTTTAATTGTTGTTTAACAAATTGATCAACTTTTTTTGGCGTATTAGCTTGTACATCATATAAGTAAGCAATTGTATCAGGAATATCAGGATTTTCCCGTTCAACCATTTCATCTTCTAAAATATTTA # Right flank : AAAAGCTTTCAAGTGCTATAAATAGTTCATATATGAAATAATATTTTACAAATTATGAGGAAATGAAAATGCAATTATCTAATAAGACTTTATCCTTATGGGGTAAGAAAAATGTTAATGATGACAATGAAAAAATGTGGTTACCATTAATTGCACATTTAATTGATACAAAAAATGTGATCAATTGGCTATATAATCATTGGATCAATGATGGTCAAAGACATATTTTGCAACGGAATTTTGAAGATGAAGATATAGTTCAAAATTTAGTGAAGTTTTTGGGATATATACATGATATTGGAAAGGCAACACCTGCTTTTCAAATTAAACAGTCATATATCCATAATGAAGATTTAGATCAGAATTTAGTAGAAAAATTATTGCGAAATGGCTTTGATGGTCTAGATAATTCAAAAATTAAGAAAATTAATACAAGTAAGACGCCTCATGCATTAGCTGGAGAAGTTATTCTAGAAAACAACGGGTTAAATGAAAGTATA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.60,-9.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //