Array 1 1639553-1645046 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031325.1 Neisseria polysaccharea strain M18661 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1639553 32 100.0 34 ................................ GATTTCACCTCGCGCGGTGGTCAAATTTGAATCC 1639619 32 100.0 33 ................................ CAAGTTGTTAAAGAGTGTTCACGCTTGCCCGTT 1639684 32 100.0 35 ................................ CCTTCCCCTCTGTACAATGCGCTCCATCAGTTAAG 1639751 32 100.0 34 ................................ CCAAAAAGGGTAGGCGTGTTGTAGCACCATTTTC 1639817 32 100.0 33 ................................ TTATTTGCACGCCCTGCCCTTATATAACACGGC 1639882 32 100.0 34 ................................ TTCCCAGTTGTCATACATCAAGTTTTGTTAGGGC 1639948 32 100.0 33 ................................ TAAGCTGGTTACGCATTTGTACCACGAATATTG 1640013 32 100.0 34 ................................ CCATAGGCGTTTTGAAAATATTTCAATATGGCAT 1640079 32 100.0 34 ................................ AAAATGTTATCTTTGGATGACAGACACCGGAGAG 1640145 32 100.0 34 ................................ CTTTTCCTTCGGCGGCGCGGGTTTTTGTACGGTT 1640211 32 100.0 34 ................................ GAAGCACCGTTGCAACTGACGGGCGGCGAACCGC 1640277 32 100.0 35 ................................ ATCTTTTTTGATACCGGCCAGCGTTTTGAACTGGG 1640344 32 100.0 35 ................................ AGCTAAGGCTGATACGCTTACAAATTTGGGGCTTT 1640411 32 100.0 34 ................................ AAATATTCTTTTGCCACGGTTTCCAGGGGGATAT 1640477 32 100.0 34 ................................ CATAGTCAAACTCCTTTTTACGCAAGTATAAAAA 1640543 32 96.9 33 A............................... TCTAATTTTGAGAAATTCTTACTGTCACCGAAT 1640608 32 100.0 35 ................................ TGTGAGATACATTTCCCAATCCTCCTGCTTATAAG 1640675 32 100.0 35 ................................ AAACTCATCGCTGCCTCCCATTTCTGTGCTGTTGA 1640742 32 100.0 35 ................................ CTGACCAACGCAATCCGCCCAAAAATTACCCGCGT 1640809 32 100.0 34 ................................ TTTGACGAGTGGAACAGTAAATTTCTACCGCACC 1640875 32 100.0 35 ................................ CCCGTTGCCTGTGTCAAATCGTCAAATTCATGCAA 1640942 32 100.0 35 ................................ ATCTAATAACATAATATATTATAAAATAAAATATT 1641009 32 100.0 32 ................................ CATCTATACCAATCCTCAAGGTTGGGTTTTCG 1641073 32 96.9 33 G............................... CGGAGTGAGTTTAAACGGACTAGGCCGTCTGAA 1641138 32 100.0 34 ................................ CGCTGATTTATAAAGCCCGAACGCCTTTTTATCC 1641204 32 100.0 33 ................................ CTTCAAAAAATCAACATCGTCAGCAAGCAGGAA 1641269 32 100.0 34 ................................ CGCCCAACCGGCGGTGCTGTGGGGACACCCCCCT 1641335 32 100.0 32 ................................ CAGATTTCTGAAACTCTACATTGACGGTTTCA 1641399 32 96.9 35 G............................... AAATCGGGGGCGGGTTCGGGATTGGGACGCGTGCC 1641466 32 100.0 34 ................................ AAATTTCTGACAAATCGGGAAAGCGCCTGAAAAA 1641532 32 100.0 33 ................................ AAAACCTGAATACTGGATTGAGGATATGCATGA 1641597 32 100.0 34 ................................ TTTTTCAACTAGCCGTATCAGGCTTTCGATTTCA 1641663 32 100.0 34 ................................ CTCCTACCGTTACCCAAGACGGAAAAATCATCAG 1641729 32 100.0 33 ................................ TCTATTTCATAAATTAAAAACAAAATTCGGGAA 1641794 32 100.0 36 ................................ TAAATCCACATCCGGTTGTTCGTGGATAAAGCCGAA 1641862 32 100.0 34 ................................ TAGTATTTACACACTCGATAAAAAAGTTTATGAC 1641928 32 100.0 34 ................................ AAGTTGTCGCAACATTCGGCAGGGACGCGCAAGG 1641994 32 100.0 34 ................................ AAAACCATCATCCCCTTAATGTCGGGCGTGTACG 1642060 32 100.0 34 ................................ CGCACAGTGTCCCGCCCCCGTTACGTTCACTATA 1642126 32 100.0 35 ................................ ATTGGTATTTTCCTTATTTATACAGCCTTGATACG 1642193 32 100.0 34 ................................ CGGATTGCGGCTTAGGCTGAAACTAATAAAACCC 1642259 32 100.0 33 ................................ TCTTTGAGCATAAGTAACAGTAATCCCGTCAAG 1642324 32 100.0 34 ................................ TCTTTGAGCATAAGTAACAGTAATCCCGTCAAGG 1642390 32 100.0 32 ................................ GCTGGATCAGGATTTGGCTTGGCAGTTTGCCC 1642454 32 96.9 34 G............................... CACTCTAGAGGTTATGGAACGCCCGAGGGGTTCC 1642520 32 100.0 36 ................................ TCAGACATGGAGCTCGCCGACAACTGGGAAGCCTAT 1642588 32 100.0 34 ................................ GCCCAACGATTCCAAGCGCGAACGAGACGGCATC 1642654 32 100.0 34 ................................ AATAAAAATCTTCCTATCTTTCCACTCATCATTT 1642720 32 96.9 34 A............................... AATAAAAATCTTCCTATCTTTCCACTCATCATTT 1642786 32 96.9 34 A............................... ATGAGCAGCCCGACAGAGGCGGAGCAGGTCGGTG 1642852 32 100.0 34 ................................ CCTGCGCCGTAACGTTGCAAACGATGTTGCAAGC 1642918 32 100.0 33 ................................ TCCCCCATGAACTCAAGCTCGCCACGACCGGCG 1642983 32 100.0 35 ................................ AAAACAATCATTGAAAGGCAGAACCATGAACAAGC 1643050 32 100.0 33 ................................ TGTATCTCTCTCCTGAAACGGGCGACATCGGAC 1643115 32 100.0 34 ................................ CGGATGCCCATTAGTTTCCGATGCCGAATATATG 1643181 32 100.0 35 ................................ AAGTAACCCCGCGTCCCGATCTCACGCCAGGAAGC 1643248 32 100.0 35 ................................ AATGCCCACGAACTGACGGAAGAGCAAATCATGTC 1643315 32 100.0 34 ................................ TAGGAAGCCGTCAACAACGCTCTCACCGTAGAAC 1643381 32 100.0 34 ................................ AAAATAAAAATCTTTCGGTTTCAGCCCCTACCCC 1643447 32 100.0 35 ................................ TTGTTGGCATTGATGGCAAGCCGTCTGATGCTCTC 1643514 32 100.0 34 ................................ CGTCTGGGCTACCAGGCGTTAACCAATCGCCATC 1643580 32 100.0 35 ................................ AGAAGCTCTATCGGCTGACTTCTCACTTTCGATTT 1643647 32 100.0 35 ................................ CGAAAATGCAGCCGTACCGATCACGGACGCAAACA 1643714 32 100.0 34 ................................ GCAGCAAAATAGAGATTTTGTAGCAAAATTTGAG 1643780 32 100.0 34 ................................ ATTTTTTTGCTCCTATCCGCCCGAAGACGGTCAG 1643846 32 100.0 35 ................................ TGGCTTGTAAAACAGTGATGTCTATATTTTTGTAA 1643913 32 100.0 35 ................................ TGCCGATTCCGCTTTGTCGGAAATGGAAAAGCTGG 1643980 32 100.0 34 ................................ ACATTAAAATAACATGTATTAAAAAAACATCCTA 1644046 32 100.0 33 ................................ TACGAAAATGAAATCTCGCCTGATTTGGCGTGG 1644111 32 100.0 34 ................................ TTATGTAGGTTCAACGGTTCTAATTCTGTTCGTA 1644177 32 100.0 34 ................................ ATTTGCTATTTCCTTTCATCAAAAAAATCGGTTA 1644243 32 100.0 34 ................................ TACGAAAATGAAATCTCGCCTGATTTGGCGTGGC 1644309 32 100.0 34 ................................ CTTTTAAATATTTATTTTTGCACGGATTTAAGTG 1644375 32 96.9 34 C............................... TATTTATCAAGTATAGTGCGCCGTAAAACGGTGC 1644441 32 100.0 34 ................................ TACGAAAATGAAATCTCGCCTGATTTGGCGTGGC 1644507 32 100.0 35 ................................ TCCCTTGAGGTCGCCGACAAGTTGGCAGGAATGAA 1644574 32 100.0 34 ................................ CTTTTAAATATTTATTTTTGCACGGATTTAAGTG 1644640 32 96.9 34 C............................... TATTTATCAAGTATAGTGCGCCGTAAAACGGCGC 1644706 32 100.0 34 ................................ ACGGTTGCAGATACTGCACGAGAACACGCTCAGA 1644772 32 100.0 34 ................................ TGCTTCGGTATGCACGGGTAAGGCGGATATCGGG 1644838 32 100.0 34 ................................ AATCCCAAATCTTTTTTGATTTTGTTCGTCAGGT 1644904 32 100.0 36 ................................ CCGCGCAAAATAAAACGTTGCCCCGATTTGCCGGCT 1644972 32 100.0 11 ................................ CGCCAGCGCGA Deletion [1645015] 1645015 32 81.2 0 .GT.G...G..TC................... | ========== ====== ====== ====== ================================ ==================================== ================== 84 32 99.5 34 TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGGGACAAGAAAATGCTGATGTTGATAACTTATGATATTTCGCTGGAGAATACCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCTCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCACGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATTTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATATTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCAAAGCCTGATGTAGTAAGGCTTTCGGAAGGAGCT # Right flank : CCACAATTTCATGGCGTACCTTTTTCTTTTAGCCATTGCAACGCGGCTTCGTCCCACAGTTTTTTGGGTTTCACGCTCAAACGGCTTTGTTGCCAAAATTCGTGTTCTAACTTGGTGCGTAATTCTTGGGCTTTTTGTTTGTCTTGTGTGCCAGTAGAGCGTCTAACTCGCTCGCCGCCTGGCGTTCTGATGTCCAAGTACCATATGTGTAAGAAATCCTAGCGTTGTTTACAGTATATGGAAGACAATACCGGAATGAACATACACAAAAACACCCGTCTTACCCCGCACCGGCGCCAAGCCGTTTGGCGTGCCTATACGCAGGATAAAGCAACCGTAACCTCGCTCTCACGGCAATACCAAGTCAGCAGGGTAACCATTTACCGCATCCTCAAGGCCGCACGGTTACAGCTGCTCACACCACAAAAAAGTACCAACAACCGTTTCAAACAGGCAAAATACGGCATAAAACGGCTGGCCAAAGTTGAAAAAGCCATCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //