Array 1 29530-35658 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGYP01000001.1 Shewanella putrefaciens strain NCTC10695, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29530 29 100.0 32 ............................. GTCAGATTCTTTTGCTTCCAGCTTCTTCTCTA 29591 29 100.0 32 ............................. CCATATCAGATAATAGCCCCCTTTATAGTCAC 29652 29 100.0 32 ............................. TCTTGGTTTAACAGCCCGTGGTTATAATTATT 29713 29 100.0 32 ............................. TTACATAATCAACAGTTTTACCACGCATGAGT 29774 29 100.0 32 ............................. CCAAATATGATGCCGGGCATGGAGTGGAAGCG 29835 29 100.0 32 ............................. CTATCTACAATCAGATCACCGCGTTACGTATC 29896 29 100.0 32 ............................. CCGTCCAAATCGCACGCAGAGCCGAAAAAAAG 29957 29 100.0 32 ............................. GTTCTGGCAAGGCATCTAAATCGGAAAAACTA 30018 29 100.0 32 ............................. CATTTCAGATAGGCGAGGCATGCCAACAGAAA 30079 29 100.0 32 ............................. TAGAAAAAGAGACGGTGAGAGCTGTTATTGCT 30140 29 100.0 32 ............................. TATGGAGCGCATCCAAAGTTTGATTCTTTTGT 30201 29 100.0 32 ............................. CCAATTCCCTTAACAGTCCTGGGTAAGAACCA 30262 29 100.0 32 ............................. ATCAATGGCTTTGTCGTTAAGTTACCGCCTAA 30323 29 100.0 32 ............................. TCAGGCTTAACCGTTCTTATCCTTGCCATACC 30384 29 100.0 32 ............................. TCAAATTCTACTTGCTTGCCGTACCGGGACAT 30445 29 100.0 32 ............................. GGTTCAAATTCTGGTTGTTGCTGTGTATCAAT 30506 29 100.0 32 ............................. GCTACAATAACGGCCTGCTCAGTAGCCCAAAA 30567 29 100.0 32 ............................. GATATTACCGATGATGCCTTGTCCATAGAAGG 30628 29 100.0 32 ............................. GTTTCAGTCTGCATCATCTTGTAGCCCATCGC 30689 29 100.0 32 ............................. TCCGATGGATAAACTTCTTAGAACTAATTCAG 30750 29 100.0 32 ............................. GCTGGATGGGTATTTGCTGTCCCAGGTATCGG 30811 29 100.0 32 ............................. TCAGCCGCTAATATCGAAGTTCAAACTGTTTT 30872 29 100.0 32 ............................. CCATTCTTGCCGGGCTTTATCGCGTTACTCGT 30933 29 100.0 32 ............................. GCACTATAAACGGATCGTGCCAAACACCACAA 30994 29 100.0 32 ............................. CACCTTGTTAACTGCTAAGGCATCTTTATTTC 31055 29 100.0 32 ............................. TATTGGTCATTGATACAGACGATGATATCGGT 31116 29 100.0 32 ............................. GTAGCATTGCAGGACTTAGTAAAGCAGTTCCG 31177 29 96.6 32 ............................A CATTGACACGAACTTGGTCTCCGTCTAATTCC 31238 29 100.0 32 ............................. CCGATTTAATGCGCTTTGGCGCGTAGCGCCAG 31299 29 100.0 32 ............................. CTAGTGCTGGCGTGCCTTGGGATGGTTGATCC 31360 29 100.0 32 ............................. ACCAGTTGATATAGACTCCTTTTCGTCGCTGA 31421 29 96.6 32 ............................T TTGGTTAATGAGCAGAACGTCTTTTTACAGCC 31482 29 96.6 32 ............................T TTTACGAAAGACCCTGAAAACCTTCAGGTAGA 31543 29 100.0 32 ............................. CAAACGCTTTCAGAGTACGATTTAGGTTCTTA 31604 29 100.0 32 ............................. CAGTCACCCGCGAGGCAGAGCAACGCACTCAG 31665 29 100.0 32 ............................. TGCTGCCCTTAGGGTCATCGCCACCGTAAAAC 31726 29 100.0 32 ............................. TCCTCTGTAGAGGAATTAAACCAGCGTAGTGA 31787 29 100.0 32 ............................. TGATGCTGTCAAATCAGGTGTTCTTGATGTTC 31848 29 100.0 32 ............................. CTTTAAAGAAAATACTAAGTCTTGCGTTTGGT 31909 29 100.0 32 ............................. ATTCATAGAGAATTGTAACAGATTAGGGATTG 31970 29 100.0 32 ............................. CATTCAAAGTTCGACTTATTGCTTGCTTTGCT 32031 29 100.0 32 ............................. TAAATCAAGTCCGCCAGAGCTAAACGAATAAA 32092 29 100.0 32 ............................. GCAACAATAACGGCCTGCTCAGTAGCCCAAAA 32153 29 100.0 32 ............................. TGTTATTGGCTAAAAAAATTGCGCGTACCACC 32214 29 100.0 32 ............................. TCCTCCAGAGCTAAACGAATAAATGAGAGCTC 32275 29 96.6 32 ............................A GGTTTATGTTGAGGTTTATGTAACTGCCAATG 32336 29 96.6 32 ............................T AACGTTTGTCCAGACAATTGTGGCTGGCAATC 32397 29 96.6 32 ............................T GAACAGCGGTAGCATCATCAGGGACGTAAATC 32458 29 100.0 32 ............................. TTGTATGGGGTTGTTCTCAGGCACTCTGTTTT 32519 29 100.0 32 ............................. TAAAGAGTTGCTCGTTCTATGCCAGTCAATAA 32580 29 100.0 32 ............................. CGTAAACGGTTAGTAGCAAAGTACTGCAAGGA 32641 29 100.0 32 ............................. GTTTGTTACTCGAACCGCAATTTTGATACCAA 32702 29 96.6 32 ............................T CTTTCACGCTAGCATTGTTAATGGCTTTAAAT 32763 29 100.0 32 ............................. CTTGGCAATGGATGGGTGGTGATAAAGATGGC 32824 29 100.0 32 ............................. CAGTCCGATTGTGAATGCCGAACTTGGTTTTC 32885 29 100.0 32 ............................. TTTTTTGGCTTCTGCTCGTAAGCCGTTCTTTA 32946 29 96.6 32 ............................T TCTGCACCATCTAGGATGGTTTGCAATGTATC 33007 29 100.0 32 ............................. TTGAGTGCTATTGCTGATCATGCTGCATACTC 33068 29 96.6 32 ..A.......................... CATGTAGTCATGAAGCACGATATTTTCAATAG 33129 29 100.0 32 ............................. TCTCGCGCTCGATGCTTGCGTGAAATGAAGAA 33190 29 100.0 32 ............................. AACCCCCATTTAACATCAAATCGTGTTCCTCA 33251 29 100.0 32 ............................. TCTTTATCAAGCTCACTCGCGCTAAAACTAAT 33312 29 100.0 32 ............................. TCTTTATCAAGCTCACTCGCGCTAAAACTAAT 33373 29 100.0 32 ............................. GTGGTATGCACTGCCTTACCAAAATCAAAGTA 33434 29 100.0 32 ............................. CAAGTGTTTCAGCCTGGCGCCGAGGTGGTTAG 33495 29 100.0 32 ............................. CCTCATAAAGTCAAAGACTTATTGCTCGATAG 33556 29 100.0 32 ............................. TCTTTCATTTCAAAAACTTCACACTGAATTAC 33617 29 100.0 32 ............................. CGAAAATCTCTCAGCCATGGCATTGATCGAAC 33678 29 100.0 32 ............................. TTGCCGGGCTCAATATTCAATCAACCTTATTC 33739 29 100.0 32 ............................. GCACAGAAACGAAGTGGGTTAAATATATTTCC 33800 29 100.0 32 ............................. ATTTACGGTGTTTTCATCATGAAAAGTGTCAC 33861 29 100.0 32 ............................. CATGGCGATGATGTCACAGGGTTATTAAACGG 33922 29 100.0 32 ............................. CCGTATGAATCTGTCAGTAATTCAAAATCAAA 33983 29 100.0 32 ............................. CCCCCTGATCCTCCTAGTCACGCTGGGCTAGC 34044 29 100.0 32 ............................. CCAAACAGAGGCGGGTGGTGCTGGTTAGGAAA 34105 29 100.0 32 ............................. CCTCGATGCCTTCTTTGCAAAAACCCAATTTA 34166 29 100.0 32 ............................. GTAGAAAAATTAGCGAAGGAGTTTGCTTTCAA 34227 29 100.0 32 ............................. CGCCCTCTCTGGGCGCTCATACAGCTCTATTC 34288 29 100.0 32 ............................. CAATCAAAGAAATCGATTGGCAAAAACATTTA 34349 29 100.0 32 ............................. CGAACGCCGATCTCAGGCATCGAGCATGAGAG 34410 29 100.0 32 ............................. TCTCTCTATCAACATTGGGATGTTTTCCGACG 34471 29 100.0 32 ............................. TATGCTCTTAGTCAGGGAGTCACAGAGGAGGA 34532 29 100.0 32 ............................. CTATCAACGATTACGTGACCTTGGCCAACATG 34593 29 100.0 32 ............................. CACATGATCGGCAGACCGAGCAGCCAGCTAAT 34654 29 100.0 32 ............................. CCGCTGCTAGTTCGACACTGGTAGATTTGTGA 34715 29 100.0 32 ............................. CCTCTTTATCTGCGGATTCCGCCATAAATTCC 34776 29 100.0 32 ............................. CAGTTAGTGCAAAGGTTGAGTTGATTGAACAA 34837 29 100.0 32 ............................. GATGTGGAGTCGGGCAAGTCTCAACTATCGCC 34898 29 100.0 32 ............................. CTATTAGACAATCTTGAAGTCTATCGAGGTAA 34959 29 100.0 32 ............................. GCACTATAAACGGATCGTGCCAAACACCACAA 35020 29 100.0 32 ............................. CCTACCGCTGGTATGATTACCGCTGTCGAAAC 35081 29 100.0 32 ............................. CATTGCGCATCGAGTTATTAGCCGCGGTTAAC 35142 29 100.0 32 ............................. CTGCAAATGGCAGCAATAGAGATAGGGTATAA 35203 29 100.0 32 ............................. CATGGATAATAAAATTGGCTCTGGTGGTTCTG 35264 29 100.0 32 ............................. GGATAATGAGGAACACGATTTGATGTTAAATG 35325 29 100.0 32 ............................. TGTTGGCGTTCGTGCGCCGCCACAAGGGGAAA 35386 29 96.6 32 A............................ CACCATGAACCGGGCTGTCCGTTCATTGTTCG 35447 29 100.0 32 ............................. CCAAACAAGAAACCGATGGCCGCAAGACGCGC 35508 29 100.0 32 ............................. TTGATGGAAAAACTGAAGGAGAAGGGGATTAA 35569 29 100.0 32 ............................. TTGACTAGATTAAATAAATCCACTCACTAATA 35630 29 96.6 0 ...........G................. | ========== ====== ====== ====== ============================= ================================ ================== 101 29 99.6 32 CTGTTCCCCGTAAGCACGGGGATAAACCG # Left flank : AGAGGAAATACTGACCGCCGGTGAAATTACCCCGCCAGAGCCTTACCCCGATGCGCAACCGCCAGCATTACCTGAGCCGCCCTCAATTGGCGATACCGGACACCGGAGTAGCTAAATGAGTATGTGCATGATCGTAACAGAAGCGGTGCCACCAAGGTTACGCGGACGTTTGGCAGTATGGTTGCTGGAGGTAAGAGCTGGTGTGTATGTTGGCGATGTAGGGCAGCGCGTGCGCGAAATGCTGTGGCAACAAGTTGAAGGCATGGCTGAAGACGGCAATGTGGTAATGGCCTGGGCTACTAATACTGAATCAGGATTTGATTTTATTACCTACGGCAATAACCGGCGGCAACCTGTTGATTTTGATGGGTTAAGACTGGTTACCTTTTTGCCTGAGCCAGAAAAAAGCAATTAGCCAATTAGCTCTTTAACAAGCCGGAAAAATTGGTAGAAAAAAGCAGGCACTTTTTTCTATTATAAATCAGGTATATACTTTTAGT # Right flank : GAAACCACTCTCGTTTGGAGTGATTGATAGTAAATAATTATATTGACAAATATAGTCAAACATATACAATTTAGGTATTAAATTTTAAAAAAAACTTGCAATGAAATACTTGACTGAAAGCTTAAAGAAAGTAGATCAAGACCTTGCTTATTTTGTATCCCCTGAAAATAAAGATGGGTTTATTAAGGAATTTGCATCATGGGTCTATGGTGAGTGGTCAAAGAATGATTTCTATGAAACCGATATTGTAGATTTAGGCTATGATTGTTCTTCGTACCCTGAAAAAACGAATCAATCACTCTCCGATAAATGCCCCACCTATGCTGATTTTATTAATGCAAATACAGGCTTTTCTGAATGTACTCACGTTTCAGGACAAGGTATGCGCTGTCAAGAATATGAGGAAAAATTATTAGAGATTTTTGGTGATGCTTGCGCTAAAAAACTAGATGATTTAGTAGAGCTATATCAACTAGAAGTGCCTGAAAAATACAAAAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTAAGCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAAGCACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 889947-888657 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGYP01000001.1 Shewanella putrefaciens strain NCTC10695, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 889946 28 100.0 32 ............................ GCAATGGAGCATCCAAAACACACACAGTAGCC 889886 28 100.0 32 ............................ ATGAACTAACGGCGCTACTTGCTGACGAGGAC 889826 28 100.0 32 ............................ TCTAGTATTTTACTTCGCCATCTTCCACGTTG 889766 28 100.0 32 ............................ GCATCGAAAGCATTGCAATGACTATCAAGAAG 889706 28 100.0 32 ............................ TTCGTAAATCTCGACGTTATTAACGTCATTAA 889646 28 100.0 32 ............................ TTACTAGCGTCAAAGAAAAGAAAAAAGACAAA 889586 28 100.0 32 ............................ AAGGAACAACTGAGGCTCTAGAACAGCAGGTT 889526 28 100.0 32 ............................ TCGGTAGCAGCGTTGCCGGCTATCATCATTTC 889466 28 100.0 32 ............................ ATTCCAGCCTGTTTTATTTTTGTCACAATGGC 889406 28 100.0 32 ............................ GCTAAAACACTGAATTGTGATCATTTATAGCT 889346 28 100.0 32 ............................ ACATGGGGCTGTGTACGTTAACACTATTTGCA 889286 28 100.0 32 ............................ GATCCGCTGCAAATGGCGGCATCACTTAATTC 889226 28 100.0 32 ............................ TTCATGAAAAAGCACGTTGAAACGGCGATTCG 889166 28 100.0 32 ............................ CACTGATGCCGGAGTGAGAACACATAGCCGAG 889106 28 100.0 32 ............................ ATTGGTCGGAAACTCGAACTGGTCGAATACGA 889046 28 100.0 32 ............................ TAACTGAACAAGATAGGTATCTGCAATCGCTA 888986 28 100.0 32 ............................ TAGGGGATAAACTACACCGCTATGTACAACCT 888926 28 100.0 32 ............................ TGTACAGCCGTGATTTTAGCAATCGCTTTGGT 888866 28 100.0 32 ............................ TACTGGCGGTACTTGTTCTCCATTTCAATTTG 888806 28 100.0 32 ............................ GACTCTATGAGTAGCGTTTTACCACCTAACAC 888746 28 100.0 32 ............................ CACAAGAGAAGGTGAAGTATTTAAAAATTCAA 888686 28 89.3 0 ..........G...T...........T. | TG [888662] ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.5 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : AATATGCTTACTTTAAACGCCGCCACTTTAAGTCACCTGACAAACTGCGCAGAAATATCGATGCTCGTGCGATAGTGATCGCCCAAAAAAATGGCTTTGCTATTAATGAAGTTAAGACGCGTTTATTAGCGTCGATAGATAATCTCGATACTAAATCTAAATTGCCGTTTATCAACTTACGAAGTTTATCAACGGAGAAAGATGTCAGTCCCGCAGATCGCAGAAAGTTTTTATTGTTTATTGAGTGTGAAAAAGTCACCAAACCTAGTCAAAATAATGGGCTATTTAATTGCTACGGGCTTAGCCGTCGTGCTCAAACAGAACAAGCCGCAGTCCCTTGGTTTGAAGGTTAATTTAGAGACCTAAAATACCCTTTATTTTTGCTCTTTAAAAAATTAGTTTTAAAACAAAAAGTTACAACAGTTGATATTTAGAAAGGTAAAAGTACGTTTTTTTACCTATCTGCCTGTTGTAACTTATTTTTTTGCAGATAAGCTATT # Right flank : TAGCGGTAAGGGTGAGTGCTAATATTGGCGTTAATGTCGTTGTTAACTTGTAGTCTTATCTTAAATCAGCATAATGCTTCGAACTCCCTTTTAACTTTAAGCCTAGTATTGTGATGTATGGCGTCAGCTAGAGAGTGCCAGCCCATATCGGCTATTGATGAGTTCAATAATTGATTACGGCCTTACGATACTTTTTGAATATTTTATAACACCTTGATAAAGGATAGATTTCCCCTTTGACTCGCTCCCGCCAATCAACCACTCAAGCCTCAGTGGTTAAGCCTTTAGCCTCAAACGGTTCTGTATCGGTAAGTCGACTCTCGACTGAAGTGCAACGTGCATTTTTGCAAGGAGGGGTATTGTCGACGCATATTCAAGGGTTTAGTGCTCGGGAAAGTCAAATGCAGATGGCACAAGGGGTAAGTGAGGCCATTGCATCAAAAGGTAATTTGGTGATTGAGGCGGGAACGGGGGTTGGAAAAACCTTTGCCTATTTGATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //