Array 1 104453-103386 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCL01000001.1 Salmonella enterica subsp. enterica serovar Grumpensis strain 06-0487 NODE_1_length_493955_cov_3.79519, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 104452 29 100.0 32 ............................. CGATTCAATATCAGCGGCCAATTCCGCTAACG 104391 29 100.0 32 ............................. ACGGGACTGTTAGGGATAGACCCCGGAGATTT 104330 29 100.0 32 ............................. GGTTACCCGGCGTTTCTGGCTGCGTACCGGCA 104269 29 100.0 32 ............................. TTCGAGTGTCTCGTTAAAAGGCGCGAAAATAC 104208 29 100.0 32 ............................. GTTTAATCTGATATCCCCAGCACCAAAGGAGT 104147 29 100.0 32 ............................. GAGTGGCGAAAGGGGCCGGCCTTGAAAAGTGG 104086 29 100.0 32 ............................. CTTCAGGCCAAACGTACAGCGGAGCTACCAGC 104025 29 100.0 32 ............................. ATCCAGCGCCTCGCGAGTGTTGCCAGTTTTGC 103964 29 100.0 32 ............................. CCAATTCCTCTCCGCGCTGCTGCGTGATTTTC 103903 29 100.0 32 ............................. GCACCCCCATATCTCCAGCCAACGTCTTGAAT 103842 29 100.0 32 ............................. TTGTCTTTTTTCATGTTGATGACGTCGCCCTC 103781 29 100.0 32 ............................. ATCGTTGTCCCGATCAGAATGTCGCCGCAACA 103720 29 100.0 32 ............................. TGTTGGTATACTAACTGTCGCTAAGTGTTCAA 103659 29 100.0 32 ............................. CCATCACCAACTCTCGGTGTTATGGCTCCTTG 103598 29 100.0 32 ............................. ATGATGAAATCACCCCGGAGGGGCGGGGCGAA 103537 29 100.0 32 ............................. CCTACGGGGATATAAGTAAAGAGATCCAACGA 103476 29 100.0 32 ............................. GCTGGAGTGTTACGCCCTGACTCATAATTTGA 103415 29 96.6 0 ............T................ | A [103388] ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAAAATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGTAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121149-120589 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCL01000001.1 Salmonella enterica subsp. enterica serovar Grumpensis strain 06-0487 NODE_1_length_493955_cov_3.79519, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 121148 29 100.0 33 ............................. GCGAGAATCCGCGCCGAATCAGTCGCGGTGCTG 121086 29 100.0 32 ............................. AAAACGACCTGCCCTATTGAGGAGGAGGTTCA 121025 29 100.0 33 ............................. CATGGTTTCAAGCGCTACTCCCTGCCCGGTCTC 120963 29 100.0 32 ............................. TTGACGAACGGAGTATTGAAGATGTCACACCT 120902 29 100.0 32 ............................. TAATAACAGGCGGTTCTATTACTACCGATTTC 120841 29 100.0 32 ............................. TCATACACAGAGTCTTCTGGAAACAAGCCTCG 120780 29 100.0 32 ............................. CCGCAACGATCGAGAGCGAACTGGACAGTAAA 120719 29 79.3 12 ..................AT...CGC.T. CTAAACATAGAA T [120700] Deletion [120679] 120677 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 120616 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 10 29 96.2 30 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACACACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGCCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //