Array 1 93155-93303 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQN01000005.1 Cronobacter sakazakii strain GK1027 csakGK1027_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 93155 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 93215 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 93276 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCG # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9108-7980 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQN01000011.1 Cronobacter sakazakii strain GK1027 csakGK1027_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9107 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 9046 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 8985 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 8924 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 8863 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 8802 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 8741 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 8680 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 8619 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 8558 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 8497 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 8436 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 8375 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 8314 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 8253 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 8192 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 8130 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 8069 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 8008 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : ACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 38196-35544 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQN01000011.1 Cronobacter sakazakii strain GK1027 csakGK1027_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38195 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 38134 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 38073 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 38012 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 37951 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 37890 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 37829 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 37768 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 37707 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 37646 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 37585 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 37524 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 37463 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 37402 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 37341 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 37280 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 37219 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 37158 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 37097 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 37036 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 36975 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 36914 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 36853 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 36792 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 36731 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 36670 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 36609 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 36548 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 36487 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 36426 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 36365 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 36304 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 36243 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 36182 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 36121 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 36060 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 35999 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 35938 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 35877 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 35816 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 35755 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 35694 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 35633 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 35572 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : AACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //