Array 1 191172-191933 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGVR01000009.1 Proteus columbae strain 08MAS2615 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 191172 29 100.0 32 ............................. ACTATATGAATAGCGCGGTAGATAATGGTGCT 191233 29 100.0 31 ............................. TCGCCTGTAACACTGAGCGATCTATCGATGA 191294 29 100.0 32 ............................. AACAGGTTTTCCTCTAAACCCATAGTCATAGA 191355 29 100.0 32 ............................. CGTTTTCGCATGGGCTAACAATGAAAATGGTT 191416 29 96.6 32 ...............G............. GGTGCATGGTGGTTAATTGACTCTGAAACAGA 191477 29 100.0 32 ............................. CACTCAGATATCAATGATGTTCATGTACATAA 191538 29 100.0 32 ............................. CTTTAAACAAGTCTTTCCTCCTGCAAACCTGA 191599 29 100.0 32 ............................. TTTCTTTACGGTGATAAGTGGCAGGTTTCTTA 191660 29 100.0 32 ............................. GGATTGTTTGTATTGGTGATCCCGTTTCTTGC 191721 29 100.0 32 ............................. TAACGTGTTATCGGCGATGCGTAACGCAGGTC 191782 29 100.0 32 ............................. GTGAATTTAATGTGGGTTTCGGGCATAGAACA 191843 29 100.0 33 ............................. CTTTTATCTCCTATCGATGTTTCAACGTCCTAC 191905 29 86.2 0 .........................TGAT | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.7 32 GTGTTCCCCGTATGCACGGGGATAAACCG # Left flank : TTAGTGCCTAATGCCAAACCAGCGTTAGACTGCCCAGTGGTATTCCCTTATGCACCTAATGCGGTATTGGTCGGCTTTTTAAGTAGCTTTGCTGCTGGTGTTATCGGTATGTTCATTCTGTATGCCTTAGATTGGACGGTGATCATTCCGGGTGTTGTTCCTCACTTCTTCGTGGGTGCAACAGCAGGGGTATTTGGTAATGCAACAGGTGGGCGTCGCGGTGCGATTTTAGGTGCATTTGTTCAAGGTTTATTAATTACGTTCTTACCTGTATTCCTATTACCTGTACTTGGTGATATCGGTATTGCTAACACCACATTTAGTGATGCAGACTTTGGTGTTATCGGGATCTTATTGGGTATTATTGTTCGCTAGTTACTTTATTCATTAAGTTAAATAGAGCGCCTTATTGAAGTTAATTCATTAGGGCGTTTTTTTATTCTTTTTGGTAAAAAAAGAGAGTTAAATTTCTTTTTTATATTCAATCTATTATGATTAGA # Right flank : TTCTTAAATATTTATTTTTCCTAATTTTATTTGAGACAATAAATAAGTAATAGCTAGTATTTTTTATCATTATTAACATTAATATTATATTTTTTAAATTATTGGTCGTATGCTGGATAAAGTATTAGAGTTATAAATAAATAGGGGTAGGTCTAGTTTTTAGTATTAAATGAAGAAAATAGTTTTTATTCATTATAAACTTTAAAATATGAAGAAATAGTAATTAGGTTAATATGAATAGAGACTATTATAGCTATTGGGGTAAATTTAAATCAGACAATAATAGTGAGTGTTATCACTTGCTTCCCTATCATAGCCTTGATGTGGCAGCTGTTGGCTCTATATTATTTTCAGCAGATACAAAAATTGTAAAAGATATTTCTGATTTTTTGCAAATTAACGCTGAAGATTTCTCTAAATTATTTTACTTTATACTCTCCCTTCATGATATTGGTAAATTTTCCTCTTCATTTCAATATATCGGTAAAAATATTATCGAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 200818-201762 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGVR01000009.1 Proteus columbae strain 08MAS2615 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 200818 29 100.0 32 ............................. CCACGGAATACCCAACGACAAACTAACCACTC 200879 29 100.0 32 ............................. CCACGGAATACCCAACGACAAACTAACCACTC 200940 29 100.0 32 ............................. CCACGGAATACCCAACGACAAACTAACCACTC 201001 29 100.0 32 ............................. GTTCATCCTCGCACTATTTATAAATGGCGCGC 201062 29 100.0 32 ............................. TATACAGATACGTATTTTTTAACTTCGATAGA 201123 29 100.0 32 ............................. TCCTCTTAGTCATATTAAAATAGAATATAAAG 201184 29 100.0 32 ............................. TATACCCTGCTCACTTTGGTGTAGCATTTTGT 201245 29 100.0 32 ............................. CGGAGGGAGTTCTTTGTATTCACCAAACCATT 201306 29 100.0 32 ............................. ACAAATTATCTATATGATTTAGTTGATTTTGT 201367 29 100.0 32 ............................. TTAACATACCCCAAGCTAGCTATCGCCTACCC 201428 29 100.0 32 ............................. TCCTTTACTTCAATGATGGGAGTGATTCTATC 201489 29 96.6 32 ............................T ACCGCGAACAAAGTTACGGTTTGCCATTTTGC 201550 29 100.0 32 ............................. CCACGGAATACCCAACGACAAACTAACCACTC 201611 29 96.6 32 ............................T ACCGCGAACAAAGTTACGGTTTGCCATTTTGC 201672 29 100.0 32 ............................. AAATCAATTCCAGCTAAATGTAATGCCAATTC 201733 29 96.6 0 ..........................T.. | A [201756] ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GTGTTCCCCGTATGCACGGGGATAAACCG # Left flank : AAACGTTAAATAAGCTTATTCCTTTAATTGAGGAAATTCTTTCTGCTGGTGATATTTTGCCCCCTGAACCACCTTCTGATGCTCAACCTCCTGCGATCCCTCAAGCACGACCTTTTGGTGATGAAGGCCATAGAGAAAAATAGCAATGAGTATGATTGTCGTTGTTACTGAATCTGTACCACCTCGATTAAGAGGTCGATTAGCGGTATGGCTATTAGAAGTTAGGGCTGGTGTTTATATAGGTAATGTCTCTGCACGAATAAGAGACATGATTTGGGAACAAATCAATGTATTAGCAGAAGATGGCAATGTTGTTATGGCATGGGGAACAAATACTGAATCAGGTTTTGATTTTCAAACTTATGGAGAAAATCGCCGTGAGCCGATTGACTTTGATGGTTTAAGATTAGTGTTATTTAAACCATTAGAAGAGGAAGAATAATAGTTGGTAGAAATAAATATATTTTTTTGTTTAATCAAATCAATTAAATATATTTAGA # Right flank : GATCCACTGTAAACTATTAAACAAAAACGCTACCAGTGAGAGTTTTTCAAATTTTATCTAAAAAGAGTGTTGGCACCTGCTTTGGGTGGTTTTTTTGCTATATCAATAAAAATATGTGAATTTATATGTTTATTTTATGAATACTAATGCTATTATCCTGAGTGAATATTCATATTGTGTATATTTTCGTACCTAATTAATTATAAAAATAGGTTTAACATCATAATCACTAAGGAAAAAGAAGATGTCTTTTGGTATTCGATATCTTGCATTGTTACCACTTTTTGTTATCACTGCTTGCCAACAACCGATTAATCACAATCCACCAGCGACTCAAACGACTCAGGTTCAACCTGCAATCGTGAATAACTCATGGATTGAAATCTCACGTAGTGCGCTCGATTTCAATGTGAAAAAAGTCCAGTCACTTTTAGGTGATAAATCCTCTCTTTGCGCTGTTTTAAAAGGCGATGCATATGGTCATGATTTATCATTAGTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //