Array 1 10965-10800 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUJY01000032.1 Bacillus cereus strain AFS045441 AFS045441_68_G4_Contig32_140404, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 10964 32 100.0 34 ................................ TCTTTAATAGATAATCAGGATAGAAATAAAGTAG 10898 32 100.0 35 ................................ TTTGATTCTGCGTAAGCAACACCCATGGTACTCAC 10831 32 56.2 0 ..................NNNNNNNNNNNNNN | ========== ====== ====== ====== ================================ =================================== ================== 3 32 85.4 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATAACATATGATGTAAGCACAACTAACAGTGTTGGACAAAAAAGACTGCGAAAAGTTTCGAAAATATGTCAAAATTATGGTCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTGGATGCAACTCAATTTGCTACTTTAAAGATGGAATTAATTAAAATTATTAACGAAGATGAGGATAGTCTTAGATTTTATCAGTTAGGTAATAACTATAAAAATAGGGTTGAACATATCGGTATAAAGGAATCCGTTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCACACATAAAATTCCTCGTGCATTCGCACCTGAATTTTCATAATTTATGAGTGAAGTTTAATATTTTTTATACAAATTCTCTTATTAAATAAAGAAATATGTATATTTTTAAACAGAATTAGTGTATTTTTGTATGGTTTTAAACAAAAATCGCT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCGTGGATTGAAATTTAATGTGGCAAGCCACAAGAAAACAGAAGAAAGGTCGCACCTTATATAGGTGCGTGGATTGAAATTAAAAAAGATTTGATTAAATGGAAAGAAAGAGTGGTCGCACCTTATATAGGTGCGTGGATTGAAATTCAAACCGCAAATGGTCAAGGCATGGCTCTACCAGTCGCACCTTATATAGGTGCGTGGATTGAAATGAAAAATTACTCACATTGTTTTCAACAGCATTGTGTCGCACCTTATATAGGTGCGTGGATTGAAATTAATACCTTTGATTTTCTTGCTTAGCGTGTTGTTGGTCGCACCTTAAATAGGTGCGTGGATTGAAATAGCATGGACAACTTCAAATTGTTCGATCTTACTAGTCGCACCTTA # Questionable array : NO Score: 7.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.27, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6960-7651 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUJY01000379.1 Bacillus cereus strain AFS045441 AFS045441_68_G4_Contig379_140404, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 6960 32 100.0 35 ................................ TCTAAAGGTAGTCGATTATTAACGTGATGACAATG 7027 32 100.0 34 ................................ AATTATTGGTCTATTATGGAGGCGAGGAGAAATT 7093 32 100.0 35 ................................ CTAAAGCTACAGCTCCTTCGCCGACTGCAGCAACA 7160 32 100.0 34 ................................ ACATCTGCATTGCTTGATGCTTTTGTGAATCGAG 7226 32 100.0 33 ................................ TAATTGATGGCCACTATTACCCAATCGAATAAA 7291 32 100.0 34 ................................ ACATTGGATAGTTTGCGATATCCGGAAGGCGCTC 7357 32 96.9 34 ...................T............ CTTGAGAGAAGGAAATAGGTGTTGTTATGAAGTC 7423 32 93.8 33 ...........A....A............... ATGCCAATCGGTGTACAAGCTGACTTTATTAAC 7488 32 87.5 34 A.T....T..G..................... GAAAAAACGCTTGATGACTTAATGCGTGATGAAG 7554 31 90.6 35 ..........-G........T........... TACCCCGGGTTTATATTTATCTGCAACGCTCTATA 7620 32 90.6 0 ...........A.........CA......... | ========== ====== ====== ====== ================================ =================================== ================== 11 32 96.3 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : GGTATGTATCAGCTCTTACATTCATTTCCTGTACTCCAAAACTCATCATGCCTAATAACGCAACAATTGGCAAAACTTTTTTCACAACTTTTCCTTCTTTCTCTTTATATTTAACACACATAACATACCTTTGTTTTGTTACAGGAATATGGCAATTTTCCAAAAATACCTTTTAAATTTATACATTGGTAGTTCATTCATAAAAAAAGAAAGAGATAATTAGAACGTTGCTTCATTTTAAAAGAAACAAAAAAGGAATCCTTTACGGATTCCTTTTTGCAATGCACTCTTTTTCAAATGGTACATTTTGCACCTACTTTTAGTATAACTTATAATTCCTATAAAATAAATAAGATTAACTGAAATTTACTTCAAATTGTGATAAAAAACATAATTAAGAAGCGCAGATAACTAAATATCATCCCTTTATTAAATAAAAATATTTATATATTTTTGGATAAAACTAACGTATTTGTGGTTGATTTCGAACACAAATCGGT # Right flank : TTAGTAATGCTCTGGTTTTAAAACACTCTACAGTTTAGTAGATACTCAACTGGAATTATCTACATCTGCAGTATCTAACAAACATGTAAAAAATATTAAATGGAGGGAGATTAAATGACCTATATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCCGGTATGCTCCATGATATGGGGAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAAGGGGAGTGTTGACCATTCAACTGCAGGAGGGAAATTGTTATATCAATTATTCCATACAGAAAATATTATTCCTTACAAGGGGATAATATCTGAGATAGTGGGAAATGCCATTATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCC # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //