Array 1 243407-245144 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIOS01000026.1 Corynebacterium ulcerans strain KZN-2016-48390 48390_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 243407 29 96.6 32 ............................T AGAAGCACTCATCGAAAGCCTTGGTGTGAGCA 243468 29 100.0 32 ............................. GAATATTTTTATTCAAGTTCATAGAAGAAGTG 243529 29 100.0 32 ............................. AACGGGATCAATCTCCGACTTTTGCAACACCG 243590 29 100.0 32 ............................. CGGGGTGTTTTCCTAGCTCAAGTAGTATTTTC 243651 29 100.0 32 ............................. TTCAAGATCGGCTTCAAAGGCGAGCGGAACAC 243712 29 100.0 32 ............................. GGGGCGTACAGCTCGATTTATAGCGACGTAAT 243773 29 100.0 32 ............................. CGCATAGCCTCGGTCACAGGGATGCTTTTTGA 243834 29 100.0 32 ............................. CCCCACCTACCTGCAAGTGGGAACCATCGAGC 243895 29 100.0 32 ............................. GCTTTGCTCTTGTTTCGTGACCCAGTTTTTGG 243956 29 100.0 32 ............................. GTTTGCGCACGTCATAGCGTGCGCGCCACCCT 244017 29 100.0 32 ............................. TAAGCGGCTTGATTCAGAGCAGGGAAAGCTTG 244078 29 96.6 32 ............................T GCTGTGGGCATTGAAAGAAATAAACCGCAGGA 244139 29 100.0 32 ............................. CGTATGGCTGCTTATCTCGTCGCCATGAACGG 244200 29 100.0 32 ............................. AAAGACCCCGCCACTGCCCTAAGCTGCACACA 244261 29 100.0 32 ............................. AGACGTTGGGAAGTGTCCTACTTTTCCCCTTC 244322 29 100.0 32 ............................. TTGGCCTGAGTTTCAGGCGCGTGAATGTGCAC 244383 29 100.0 32 ............................. CAGCACTTGCGCTTCATCGCCCCCGTATGCAG 244444 29 100.0 32 ............................. ATTGGCCCGTGTTCCGCGCTCATTCCGGTGTT 244505 29 100.0 32 ............................. CGGAACGGCATGGGTCTACCGGTTTATAGGGG 244566 29 100.0 32 ............................. GGGTGCTGGTTTAACTGGCCTTGATATTGCGA 244627 29 100.0 32 ............................. GGGGGAAACACACGCCAGGTGCAGTTACTTGC 244688 29 96.6 32 ............................A CGTGCTTTATCGCCGCCACGCTCGCCGTGTGG 244749 29 100.0 32 ............................. GGCGAAAAGGTAGCGGAGGAGTCCATGTCAAC 244810 29 100.0 32 ............................. GGCGCTGGAAAGCTGGTCACACAGGATTGGAA 244871 29 100.0 32 ............................. CCGGATACCTGGGTGGCTGACGGTGTACGCGC 244932 29 100.0 32 ............................. ACCCGGTGCGTGGGCAAAACCCCGCCCCGTCG 244993 29 100.0 32 ............................. CTACAAACTTTTCTGCAAACGCCACCTCCTCA 245054 29 100.0 32 ............................. ATCATTGCCCAGCTCACGAGCACGCTCGGCGG 245115 29 82.8 0 ....................A...AGC.T | A [245134] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.1 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : CGAACACCGCCAGCCCGAGAAACCCCCGAAACTGCGACTGCTCAACATCAAGGATCTGCACGCCATTAGCAGCTAACACTCGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCTCCCCATCCTATGGGGCAAAGTACCTTTCCTTCGGTCTTGTGGTTTTACACCTTCTTGCGGATCCTGCGGGGGTGTGCAATAGTCTTTCCCGCTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGACTTCTTTGGTGATTAAACACGCAGGTAAGTTAGT # Right flank : TACAAAAACCTATCATCAGCCTTGATGAACTTTTTAGACGTCGAAGACCACAGAAGAAAACAACAAGTTGATCCGGTTTTCCAGCCACTGGCAAGACCTCAGGAGTAATTCACCACGTTGCTATCGCGACAGCAATCAAGAGGAAGAGCGAAGACATGAATACGTACCAGAAAATAAAGGAAAAGACAGGAGGAAAAATCTATCTCGGAGTAGGACTACAACCAGGCAATCAAGACGAAATAGCTATCGAAGCCTGCTACATAGAAGCACTTATTGACTATGGCTATCTCGATGTAGAACTAAAGAAAGAATTTCTAAAATTATGGCTCACTGATGATATGTACGATGATCTGAGCGATCTTGACTCAATAGAACTGAAAACATATCGTAACCTACTAAAATATGCAGGCATGCAGCCTCGTGTAGATACGTCTGTCTTCCGCCCTGAGCCCGCATAAAACTACATCGTTTAATCAATACATCAGTAACAAGTTTTCTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 148488-150656 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIOS01000027.1 Corynebacterium ulcerans strain KZN-2016-48390 48390_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 148488 29 100.0 32 ............................. GGTTGCCGTCTGGAGTTCAGTATTTTGAGCTC 148549 29 100.0 32 ............................. TGAAAGAAAACGCAGCTGAGGGATTTTCCAAG 148610 29 100.0 32 ............................. CTTGTTAAAAGCATAAAAGATAGCCCCCTTTG 148671 29 100.0 32 ............................. TCTTGATCGATTCCTGGCGTTGGGGTTATTGC 148732 29 100.0 32 ............................. GCGCAAAAATTCATTAATCACGCCCTCGACTT 148793 29 100.0 32 ............................. CAGCCCACGTAATCGAATCCGACTGAGGGCCA 148854 29 100.0 32 ............................. GCAGCGGTCAGGGGCAAAATCACATCAAAATT 148915 29 100.0 32 ............................. AAATAGCGGGTCGCCTCTATGGGCCGGATTCG 148976 29 100.0 32 ............................. AGAAGATTGAGGAGAATGCGGCGGCTATCGCC 149037 29 100.0 32 ............................. ATGCCACCAGTTCCAATTCGTGAGCGCAGGAT 149098 29 100.0 32 ............................. TCACTGCGCATCACTCCCTCACCAAATAAATC 149159 29 100.0 32 ............................. CTAGCGCGGCGTTGCCGTTATAGAGCTTCTGC 149220 29 100.0 33 ............................. CTCTTTACTGGACGCGGATCAAGATTTTTAAAG 149282 29 100.0 32 ............................. CGCGAGTGTGGTGAGTTTACCTGCTCGCCACC 149343 29 100.0 33 ............................. GAAACCCGCGAGGGAACCCTCGACAGCCTCCGC 149405 29 100.0 32 ............................. CGCCCTTAAGATTGCAAATTGCAATCATTTTC 149466 29 96.6 32 A............................ CATTTTTCCTCCTCTTTCTCTTCGCTCGAATC 149527 29 100.0 32 ............................. TGGGGCATCCTCACGAGCTTTCGCAAGCTCAC 149588 29 100.0 32 ............................. TGGGGCATCCTCACGAGCTTTCGCAAGCTCAC 149649 29 100.0 32 ............................. GGCGCTTCTTGACGTAGCCCTTCATTGACTGC 149710 29 100.0 33 ............................. GTCAAGGAACCTTGCGCTCCCACCGTTGACTTT 149772 29 100.0 33 ............................. CGCAATAGGTTCCGTTGCGGTATTCCTTGCGGG 149834 29 100.0 32 ............................. CCCGCCCGCCCAGGCCACGAGATATCTGACCT 149895 29 100.0 32 ............................. TTTTCAAAGCCTCAGGAAACGCCAAAAGCAGC 149956 29 100.0 32 ............................. ACCTTCACGTATAGGGTTTGACGCATTTGCCC 150017 29 100.0 32 ............................. CTGGTGAGGGTTTCTTTTTTCCTCTTGCTTAT 150078 29 100.0 32 ............................. GAACCGGGGCCAAGTCCACTACCCGGTGGTGG 150139 29 100.0 32 ............................. CGCCCCGAAGGTTGAGTATCACGATCGGTTTA 150200 29 96.6 32 T............................ GAAACTGCGTCTTTTAAGGAGCATTGGCATCA 150261 29 100.0 32 ............................. CGTGTCTCCGGATCGAGGGAAGAACTTCTGCG 150322 29 100.0 32 ............................. TGTGGGCCTGGTGCGCCCCAAGTCAGAATCTG 150383 29 100.0 32 ............................. ATTTCGCTTCAAAAGACTCAGGATTTAACCGC 150444 29 100.0 32 ............................. AATTGGGTTAGCCATTCGGTGAAGTTCATGCC 150505 29 100.0 33 ............................. CTTGGGGACGCTCAGGCAACGGCGGCCAAGCTG 150567 29 100.0 32 ............................. TCACTAAAGTCGCCCCTGAGATAATCCGCAAT 150628 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.8 32 GGAACTACCTCCGCGTACGCGGAGAAAAG # Left flank : GCTGCAGCGCGAATAACTTTTTCTGCTAAGACTTCATCACGGATACCATACAAATTTTCGAGACTTGCATCCCCAGGATAAGGCAGCTCATCCCAGCGACGTTTTCCAAATCACGATTAATCGAGGTCATGATTTATTGATGGGTAAGGTGGGTGGACTCCTGCAGCTTTCAAAAGCGATTCAAAAGATTCTTGTTCGCTAATTTCACCAAGATAATAAGCGGCAAGGATTTTTTCATCTTCTGGAGTTCTTGGTTGCCCTTCGATTTCTGCGCTTGCTAGATCATTGCGAATCTGTCGTAATTGGTCTTCGCTAATGCGTTCAGTGGGATTCATCATGTCCATCAGTGCTCGTTTCTGGTTGTTCAAATCCGTTTTTGTCAGAGTTCTTGGAAGCCGCCAATATAGCAGGAACTCCTTTGGTGCTTAAGGAAAAAGAAGATGTGAGGAAGGACTGAGACTTTCCCAAATCAAGGATCTTTTGCATGGTAGCCCCAGCAC # Right flank : GACTAAATAACCTGCGCGTTTACTCACTCTCTGGGCAAAAATCCTCCAAAACTTCGTCTGGAATAATTGCATCGGCTTCATCCAGGGGGTCAGCAAAACGCACGTCTTCTATTAGACCACGAGCAGAGAGGAAAAGGCCATCAATATCAACGACGGGGCGCCGTTGTTTTCCTGTTGTGCGGATTCTGAACCCTTGCTCAGCATCATATTGCGGGTGAATCAGAGTAAGGGATCCTGCTAGGTCTATGGATTGGCATTTTTCCCAAAGGTTTTCCATGACGGCTCTGGATAGAACTCCTACATAAAGACCTGCGTCTACTTCGGAAAGGAAGCGACTGAGGTAGCCGTTGAGGTGGTTCGGAAGGTTATGTCCTTGGATGACCGCAAACATTTATTTACCACCATATTGTGTGTGCCCTGGGACTTCGTGGTTTCTTCCGCCGATGAGGCGGTCGTCGGTACGCTCGGGAAGATGTGGAGTGAGGATCTCCATCATAATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCGTACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 229748-229057 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIOS01000027.1 Corynebacterium ulcerans strain KZN-2016-48390 48390_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 229747 36 100.0 35 .................................... GGGGGTATCCCCACCGACCCACGACCCCTTACCGA 229676 36 100.0 37 .................................... ACGGCCGTAAGTGACCAGTCGATGCGGTCATCAGCGA 229603 36 100.0 36 .................................... TTTCTCGGCAACTTTTGCCAGCTGTTTTAACGCTTC 229531 36 100.0 39 .................................... ATGGGAACGAACCTTAGGCGACTACGAGCATAGGGTGGA 229456 36 100.0 36 .................................... GTGGGTGATGTGCTTTTGAAGGATCCCGAGCGGGCT 229384 36 100.0 38 .................................... TGGTTCAAGCATGAGCTTGACCGGCTGAAAGAAAAATT 229310 36 100.0 35 .................................... CTAGGACGCTGCGCTTCATCAGCCGAGGTATTCCT 229239 36 100.0 38 .................................... TATGTGGCCTCGCTCCTTTCCGCGCCCCCGTCCCTGAC 229165 36 100.0 37 .................................... TCAGGCCAGTGATCGACCCGATGATTCCACCATTCGC 229092 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 10 36 100.0 37 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCAGTATTAACGCTGAGGAAGATTCCGTTTTATATTGCGACCTTGGCCTGCTATCGAAAGTAGACACCACATTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATGAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTGTGGTTTTCATGGGGCAACAATAATCACCCCCTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGTTAAGTCAGTTAAAATGAGGGGGCT # Right flank : AAAACCCTCGGCGGTATTGAACTAGCCTCCAAAGGTGCCGTTTTACCGTGGCCTCTGATGGTCCAGTCTCTGACATAATCTCGCGACAGGTCAGAAGCCTGTCTTCTTCAATCCAAAATAACGCCATAAACAGAAGAGTCAGGAAGGTCATACCTCTTCCAAAAACTGCGATGGTTCCTGCGTAAAGAATCCATATCCAGCCGATAGAAGCACTGTCAACATTACGAGGGTAAGGCAATCAGTTTCTGGGAACTCCGCAAGACGTTGCCCGTATTGCTATTACCTATCGAAGTTTTTACGTGTTTACGAGCATGTAGTCTTCGTTAAGATATTGGCTAAAATTCTCCGAGTTAAGCAACAAACACCACTTACACCTAGTCCTAAAAGAAACAGCGAAACCCAGCCCAGTCCAACGGTGGCAGTATCACCAGAAAACTTGAGTATGAGGATTCCTAGTACGCCTAGGGATATAAACAAAAGGTCTACGGAGAAAAAGCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //