Array 1 33-1034 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVPR01000033.1 Salmonella enterica strain 166_11 NODE_33_length_1045_cov_2.71459_ID_65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGGC 94 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 155 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 216 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 277 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 338 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 399 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 460 29 100.0 31 ............................. AAAGTTACCGTTCCCCCCGTTTCAGAGAACA 520 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 581 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 642 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 703 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 764 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 825 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 886 29 100.0 33 ............................. TTTGCAAATCTCACCACATTACCAGGCGCGACA 948 28 93.1 30 ....................-.......T TGTCTGTAACTCATGCCTTCCCTCATCTCA 1006 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTCGGCATTCGCGCAACAACCCTGGTTGTCCCG # Right flank : GATACTGATGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [20.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 428026-429212 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVPR01000003.1 Salmonella enterica strain 166_11 NODE_3_length_482275_cov_34.8214_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 428026 29 100.0 32 ............................. TGCCTCAAGATTTTGAGCGGACGGGAGCTGGC 428087 29 100.0 32 ............................. GATGCATGGGAGCACGGTAAACCACTGGCGCA 428148 29 100.0 32 ............................. CGCATATAAAGCTGGCCTTACCGCTGGCTGGA 428209 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 428270 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 428331 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 428392 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 428453 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 428514 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTGCGG 428575 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 428636 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 428697 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 428758 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 428819 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 428880 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 428941 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 429002 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 429063 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 429124 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 429185 28 86.2 0 .........A..T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 445758-446276 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVPR01000003.1 Salmonella enterica strain 166_11 NODE_3_length_482275_cov_34.8214_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 445758 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 445819 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 445880 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 445941 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAACA 446002 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 446063 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 446124 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 446185 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 446247 29 96.6 0 ............T................ | A [446274] ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //