Array 1 5500-124 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSDY01000033.1 Aggregatibacter actinomycetemcomitans strain PN_437 33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5499 28 100.0 32 ............................ ATAATACCACCTACAAGCTTCACTGCCGAATA 5439 28 100.0 33 ............................ TCAATTTCCCACGTTGCGGAATAGATACCGTCT 5378 28 100.0 32 ............................ GAAGAATATAAAGATTTTGGTACAACGTGCGA 5318 28 100.0 32 ............................ GCTGCTGCACCAATGATAATACCACCTACAAG 5258 28 100.0 32 ............................ TTGTGAAAAAAGGTTCGGAAAATGATAGTCGG 5198 28 100.0 33 ............................ AAAATCATTACGCCCTAAACGGGTTTGATGAAA 5137 28 100.0 32 ............................ TTTTTTCCAAATGCGTAAACGACGCTCTAATG 5077 28 100.0 32 ............................ AAGACCTGTAAAAACTATTGCAAAACTTGCGG 5017 28 100.0 32 ............................ CATATCATCAACCGGCTTTAGAAGGTAAGAAA 4957 28 100.0 32 ............................ AACCGTAAATTTTAGCAAAATCTCTATTAAAT 4897 28 100.0 32 ............................ ATAATGTATGCCCACAACAGCAGCCGATACTT 4837 28 100.0 32 ............................ TGTACAATGGCGCATTAGTTCTTGTAAGGAAC 4777 28 100.0 32 ............................ ACAATATTGCCCTCCAGATATGGGTTTCGTTA 4717 28 100.0 32 ............................ ATAATGTATGCCCACAATAGCAGCCGATACTT 4657 28 100.0 32 ............................ TGTTGTTATTTTGTTGATTTTTTATACGATAT 4597 28 100.0 32 ............................ ATAATGTATGCCCACAATAGCAGCCGATACTT 4537 28 100.0 32 ............................ TTAAAAACAATATGAGAATTATTATTTAAATC 4477 28 100.0 32 ............................ TCTAAACAATTTCATCAAACTCATAATTAAAT 4417 28 100.0 32 ............................ ATGAAATAAGTCGACAAATTTTTCACCATTTG 4357 28 100.0 32 ............................ AAAATTTATAGAAATTATATGATTAATTGATA 4297 28 100.0 32 ............................ ACACTAAAGGCAGTAACTATAGAGGTGCCCAC 4237 28 100.0 32 ............................ AAAGTTTGTATCTTCATGCCATATCTATACAA 4177 28 100.0 32 ............................ AAACAATTTATTAGAAGTTAAATTGTTATGTA 4117 28 100.0 32 ............................ CGGTATAAATTATAGCTTACATTGCACTCGTA 4057 28 100.0 32 ............................ TAAACCGACAAAACTATGTGCCATTGGTTGTT 3997 28 100.0 32 ............................ TCTTTTTTTTATTTAAGTATGTTTATTATAAT 3937 28 100.0 32 ............................ CTTAACAGCCCGCTGGTTGCATTTTTTAATGT 3877 28 100.0 32 ............................ TGTTCCATATTTTTTACCACGATACAAACTTA 3817 28 100.0 32 ............................ CGTCTTAATGACGGGATTTTTTTTGTCTAAAT 3757 28 100.0 33 ............................ AGTATCCTAAGTTATTGATATTAATTTTGTTAT 3696 28 100.0 32 ............................ TGAAGCAAAACAATTTGATACATTTGCGATTG 3636 28 100.0 32 ............................ ATGAATTTTGGTCATTTAGAAATGATAAGAAA 3576 28 100.0 33 ............................ GTATCGGAAAATTATTAGATGGTCGTCGTTTGA 3515 28 100.0 32 ............................ AACTATTGAGCAACAATTTACAAATATTCGTA 3455 28 100.0 33 ............................ CTATGAGATTGGCAACCGCATAATTAGTCGAGC 3394 28 100.0 32 ............................ CTAATAGCTTCTTTGTTGCATTTTTTCACTGT 3334 28 100.0 32 ............................ ATTGTTCTTGATTATAGTAAGTTCTATTACGT 3274 28 100.0 32 ............................ TGCTGCTGTTGTGGGCATACATTATCGCAAAT 3214 28 100.0 32 ............................ TGTCATTGTCATGAAACGTAAATTTGAGTACA 3154 28 100.0 32 ............................ AAATTACAGCAAGTTCATTTTTATGAACTTTT 3094 28 100.0 32 ............................ AAATTACAGCTAATTCATTTTTTAATCCTTTT 3034 28 100.0 32 ............................ TATATGTATCCCATTCAGAATTTATTTCAACT 2974 28 100.0 32 ............................ TGTGTAATTAAAGGCAGTTTTGAGAGAAGTTA 2914 28 100.0 32 ............................ AAAATGCTGATGTAGGTTTGTTTACAATATTC 2854 28 100.0 32 ............................ TTGTGCATTTAAGAAGCGTATAAATTGTGGGT 2794 28 100.0 31 ............................ CTCATTAATCCCAATGCCGCAAGTTTTGCAA 2735 28 100.0 32 ............................ TATACAACAAATCAGGTAAAGGTAACATTCTA 2675 28 100.0 32 ............................ AACAAAACAAAGTAATTATTTAAACCGGTCCC 2615 28 100.0 33 ............................ GTTTATTTTCGCCAACAGATTCAGCACCTATTT 2554 28 100.0 33 ............................ AATGCCTAATTTAGATAGGGGCTAGGGTTTAAT 2493 28 100.0 32 ............................ CTAGACAGTCACCAGCACAAATATTAAAACAA 2433 28 100.0 32 ............................ TGAAATTGTTACAATGAGCATTTCTACAAACA 2373 28 100.0 32 ............................ TTTACCTGATTTGTTATATAAATCTAGTAAAA 2313 28 100.0 32 ............................ AAAAAGTAAGCCATTAAATTTAACACTACTTC 2253 28 100.0 32 ............................ ATTTAACGAAAATCACATGAATGTACAAGTAC 2193 28 100.0 32 ............................ TGTGACGATAAAATGAATAGTTCATTAGATGA 2133 28 100.0 32 ............................ ACAAGTAGGACAAGGACAAAATATTGCACCAC 2073 28 100.0 32 ............................ TGATTTATCTTGAAAAACGAGTTTGTCATGAG 2013 28 100.0 32 ............................ ATATTGCAATTTGCTCACCTTGAATACTTAAT 1953 28 100.0 32 ............................ GATTCACACCTTGTGCCCATGCCGGTGGTGCA 1893 28 100.0 32 ............................ TTATTGGGAATCAGTAGAAAATATAGGACAGG 1833 28 100.0 32 ............................ TAATCAATTACAGAGTTTTTTATTAAATCTGG 1773 28 100.0 32 ............................ GCCTAACACAACGCCAAAACACGTTTCTTTTA 1713 28 100.0 32 ............................ ACAATATTGTCCCCCTGATATGGGTTTTATTA 1653 28 100.0 32 ............................ TTTGCCATTACCAACCCCAGAACCGCCATTAC 1593 28 100.0 32 ............................ TTATGCGTTTTGTTATTCGTCGTATTCCGATT 1533 28 100.0 32 ............................ TTAATGTCCTTTCTAAATCGGGAGTTTGCAAA 1473 28 100.0 32 ............................ CATTGCTTTTAGATATTTTTGTCGGTGATAAA 1413 28 100.0 32 ............................ AACTTTTATTTATTTCGATGTCATTTTTCATC 1353 28 100.0 32 ............................ AAGCTTCCAAAATTTTTGAAGTAGCGGCTGCT 1293 28 100.0 32 ............................ TGTAATATAAACATTTGTAAAAAATCCATTTT 1233 28 100.0 32 ............................ TAGCATACCATAATACAAAAACTAATCATGGA 1173 28 100.0 32 ............................ TTTAAATTTAAAAAATCTATAATTGCTCAAAT 1113 28 100.0 32 ............................ TTTATATTAAAGCTGATTATCTTCTAAGAATT 1053 28 100.0 32 ............................ TCTGAAATAGCTAATATTTCCACCAATAAAAG 993 28 100.0 32 ............................ AAAAGCGATCGCATGCTCCGCAACTGCAAAAA 933 28 100.0 32 ............................ AAGATGATAACATTCTGAACTTTTCTGTTCAT 873 28 100.0 33 ............................ ATTCTTCTACCAGTATTTGAACAATACCTTTTA 812 28 100.0 32 ............................ ATTGATCAACAATATTTTTCAATGTTTGATAT 752 28 100.0 32 ............................ ACCAATAAAAATTATCTTGCTTTGTAATATAA 692 28 100.0 33 ............................ CTCTATGCCGATAAATTGGAGTTCTTACACCCT 631 28 100.0 32 ............................ TATCATTAATACAGAGTTGAGCATTAATTCTT 571 28 100.0 32 ............................ AAATCAGAAAGATAAAAAATGTAAGTCCAAAG 511 28 100.0 32 ............................ CGGGTATTACAGAGCTGCAAAAAGCATATAGC 451 28 100.0 32 ............................ ACCTGGTGTTGTAAAGGGGTGACGTTTGAAAC 391 28 100.0 32 ............................ TCTGCAATCAGCTTTTCGGTGCCGTAGGCTTG 331 28 100.0 32 ............................ ATTCAAATGCTGGAAGACGCTGAATTAATCAC 271 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTGTTCCGG 211 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 151 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 90 28 100.0 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : AATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTCTTATGAAAAGAGCAAGACGTTTTTTCAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38345-37977 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSDY01000009.1 Aggregatibacter actinomycetemcomitans strain PN_437 9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 38344 33 100.0 35 ................................. GTTCGTCCGGGTGGTTGTAATAGTATTCCGCGTTC 38276 33 97.0 34 ................................T GAAATCAATTGGGAAGAATCTTTGCTTAAACAGC 38209 33 97.0 35 ................................T ATCAAGGCAATGGGGTTGTTGACAGCAGCTACTAA 38141 33 97.0 33 ................................C TTATGTAGGTTATATATTAGCACCTGTTGCTGC 38075 33 100.0 33 ................................. CTACCGGCACCTGGAATTGGTTAGCCAATACCC 38009 33 81.8 0 .......T.....CA.....C...T......T. | ========== ====== ====== ====== ================================= =================================== ================== 6 33 95.5 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : GTTTTCCCATGCGCAAGCTGCAAAACACGCTCTATATCACCACTCAGGGCAGTTATCTGCATAAGTAGCGGGAAACGCTGGTGGTGGAGCAGGAAAGGAAGAAAGTGGCGCAACTGCCGGTGCATTCCATCGGGCATATTTTCTGTTTCGGTAATGTGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCATCTAGGTAGTAAATGGCGTCGCAAAATAGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCTGAGTTCTCATCAAATTCCTGTTAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTTATTTGTATAACGAAGATATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTCCTGATTTTCCTTGTTTTTTCAGATAGGGA # Right flank : GGCGCTTTGTTACATCTGAACTCTGACACCAACTAAACTAAGCACCTTATAAAAATAAGGTGTTTTTCTTTTCCCGCAAACCAACACAAAACTCCTTGCCCTTCCTCCGCAAAATATATAGACTGAAGCCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAACAGAAATCATATTTCCTTTCTTTTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTTCGTTAAAAAAAGAAAAATTATGCAATATGGTTTTTGTTGTCCGTTATTTGTAAATAACGGAGGGCGTGATGAGTAAGGTTGCGCAAGCGTTGACCATCGCCGGTTCGGACAGCGGCGGCGGTGCCCGGGTTCAGGCGGATTTGAAGATGTTCCAAATGCACAGGATGTCATTTGGTACATCGGTGGCCGCGCAAAATACCTTGAACGTGGTTGATATTTACGCCGTGTCACTCA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //