Array 1 61364-60735 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFCP01000015.1 Bacillus thuringiensis serovar jinghongiensis strain BGSC 4AR1 4AR1_contig000015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 61363 32 100.0 34 ................................ TCACCTCCTTGAAAGAAAACATCAATCCCCAAAC 61297 32 100.0 34 ................................ TATACATTCCATATTGGAATAAGTGAACACACCA 61231 32 100.0 35 ................................ ATTTACAGTGAAATCAATAGACCAAAACGGCGGAG 61164 32 100.0 35 ................................ AATAACACCATGCTTAAACGCCATTACAACAAATA 61097 32 100.0 33 ................................ ATAATAAGTTTATAGATTTATCAGAACAACTAG 61032 32 100.0 34 ................................ ATGAAAAGAGCCACTAGGACGACGGCAATACCGC 60966 32 93.8 35 ...................A.C.......... GATATGATCGCGAGAATTGGAATGCTCATTGGTAA 60899 32 90.6 35 ..........TC..G................. TTAGATTATTTCAATGCAAAAATAGAAGTAAACAA 60832 32 93.8 34 ...................T...A........ ATTAGACGAGATATATCCACAGAAGAAGAATTAC 60766 32 90.6 0 .......T..............AA........ | ========== ====== ====== ====== ================================ =================================== ================== 10 32 96.9 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATAACATATGATGTAAGCACAACTAACAGCGTTGGACAAAAAAGACTGCGAAAAGTTTCGAAAATATGTCAAAATTATGGTCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTGGATGCAACTCAATTTGCTACTTTAAAGATGGAATTAATTAAAATTATTAACGAAGATGAGGATAGTCTTAGATTTTATCAGTTAGGTAATAACTATAAAAATAGGGTTGAACATATCGGTATAAAGGAATCCGTTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCACACATAAAATTCCTCGTGCATTCGCACCTGAATTTTCATAATTTATGAGTGAAGTTTAATATTTTTTATACAAATTCTCTTATTAAATAAAGAAATATGTATATTTTTAAACAGAATTAGTGTATTTTTGTATGGTTTTAAACAAAAATCGCT # Right flank : GAAATTACTTGCTGCCTTATCTAAATTACTTTCTTCGCATCTCAGGTGTGTGGAGTAAGACTGATAAATTAATTGATAGTAATTTAGTGTCTCTGTTGGAGAAAGGGGACCTGTTTGAATTCATAAAGCAACGAGTGTTGATCCAATTGACATTACTAGTATACAGATTACGAAAAGTGTAAATTCTGAGCATGGGAAGGATAAAGTTTTAGATACGATGGGGATGAAGCATCGTGTTGATTTCGGAGTCTATGTTTGTTGGTGGGATCATAATTCAAAACCTGGTTAATACTCCTCTGCAAAAGTACATCGTTTGTTAGAAGCTAAACAAAATATTGAAGAACTAAAAACAATCGATGATTATACTACTATATTGGTACATGAATTAGATGGTTTAAAAGTTGAGATTATTAATGGGATGTAATAAAAAGCGTCAGAATAGTTGAAAGAAAGTATCCTTATAAGGAGATACTCTATCAACTTATTAAAGGAAAGTCGCA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 70413-69724 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFCP01000015.1 Bacillus thuringiensis serovar jinghongiensis strain BGSC 4AR1 4AR1_contig000015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 70412 32 100.0 34 ................................ GATTCCGGGTGGACAACCGGACATGTCTGTACTG 70346 32 100.0 33 ................................ CTCCACGGTTTGCGATACCTAGTGCACCCGCTA 70281 32 100.0 34 ................................ ACAGAATGAGACATTGGGCTGAAGTGATCGGGAA 70215 32 100.0 34 ................................ TACAATGAATTTAAATCAGAACGTTTCCTGGTTG 70149 32 100.0 34 ................................ ACATTGGATAGTTTGCGATATCCGGAAGGCGCTC 70083 32 96.9 34 ...................T............ CTTGAGAGAAGGAAATAGGTGTTGTTATGAAGTC 70017 32 93.8 33 ...........A....A............... ATAGAAGGGCACTTTTAACATCGAACTCTTTAA 69952 32 93.8 33 ...........A.......T............ ATGCCAATCGGTGTACAAGCTGACTTTATTAAC 69887 32 87.5 34 A.T....T..G..................... GAAAAAACGCTTGATGACTTAATGCGTGATGAAG 69821 31 90.6 35 ..........G-........T........... TACCCCGGGTTTATATTTATCTGCAACGCTCTATA 69755 32 90.6 0 ...........A.........CA......... | ========== ====== ====== ====== ================================ =================================== ================== 11 32 95.7 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TATCTAGTTATATATTAAAAGGTGAACACGAATAAAGAGAAGAATAATTAAAGTATTTGTGAGTTAGCGAAATAAATGAATTTTTAGTATTCAATATTCTTAAGAATGTTATATCATAAAAAAAGATCGAACGATGATATAAAGAATAAACTTGATAGGTGGATAGAGAGACAATATATAGTGAATTTTATTGTAAATTACGACTCAATATATTAAGGATATTATGAAACTATACATTTTGGTTATTCAATTAGGTAATAGCTATGAAAATAAGGTTGAACATATTGGTGTAAAAGAATGAATTGATTTAGAAAGTCTTTTAATTTTTTAGGTGCGAATGTATAGCGAACATGGAATTCCTAGTACATTCGCACCTAGAATTATCATGCTTTATGATGTGGATTTATGATTTTTATATAAATCCCTTTATTAAATAAAAATATTTATATATTTTTGGATAAAACTAACGTATTTGTGGTTGATTTCGAACACAAATCGGT # Right flank : TAGTAATGCTCTGGTTTTAAAACACTCTACAGTTTAGTAGATACTCAACTGGAATTATCTACATCTGCAGTATCTAACAAACATGTAAAAAATATTAAATGGAGGGAGATTAAATGACCTATATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGGAAAAATTGGTATAAAACATTTAGCTGGTTTAGCCGGTATGCTCCATGATATGGGGAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAAGGGGAGTGTTGACCATTCAACTGCAGGAGGGAAATTGTTATATCAATTATTCCATACAGAAAATATTATTCCTTACAAGGGGATAATATCTGAGATAGTGGGAAATGCCATTATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCC # Questionable array : NO Score: 8.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5532-5757 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFCP01000041.1 Bacillus thuringiensis serovar jinghongiensis strain BGSC 4AR1 4AR1_contig000041, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 5532 29 100.0 37 ............................. GCTGTATTATCTTTAACTTCTTTCTTCTCTAAATCTG 5598 29 100.0 36 ............................. ACATACGGTGATAAAACTACATCGTATCAGGTATAG 5663 29 100.0 37 ............................. GAATACTCTCACTAGGAGGTGTTGTGACGTTATGACG 5729 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 100.0 37 TTTAAATACATCTTATGTTTCTGTTCAAC # Left flank : ATATAGGGAAATACCTATCAACGTTTTGAAAAAAAAGACAAAAAAAGCGACGAAAAACGAAAAGAACCACCCAACGCCGCAAACGTACTTGGTGGTTCAATAAAAAATAACTAAATTTTTAGTAACCAACCACCTTGCGGTAGCTGTTACATAAGGCGAAGTGTTACCAGCACTTCGTCTTCTTTAGTTTATGCAAAAACTATTGTTATAATACTTCTACACATATTATAACATCAACTATAGTACATGTCATGCAGATTTGTTCACTATAGTTGGTAAAAGAGACCAAATTATTATCAAAACGAAATCAATTTTGTTCCTGTCTCAAAATACTTTGCAGGAGCATAGATTTTCCTACTCTTAATTCCCCTTTCTATGAAAAAACTTCTCTCTTTAAAAATTTTCCTTTAGCTTATCTATTGAGTTACTCGAAATCAATTCTAATTTAAGAATTTTGTTCAACAAGTTACGTACTTACGGTAAAATCAATAGACCAAAAT # Right flank : CACCGATTAAATCAACTTTTTATTACCTTCATATTTTATATAATACTATACTGCATATGAGTTTAGTGATTTTTTTACCAGCAGTTCATAAAAAAAATAAAATTCTCAAAAAGAAATAGTATAAGTCTTGAATTAACAAAGTTTATTAGATTCCCACTATCATTTCACTTGGTAAATTCACAAAAATAGGAGATCGCTATTATTTCTATACCCTATTTCAATCTCATCAAAGCTATATTCATTTAGCATTTTGATAATAGTAACTAAGTCTTCCCCCTCATTTATAATATTCCTAATTTCCTTTTCCATTTTTAATAAATTTGAGGGAGTAATCCCCCCCCTAAAAGTAGATTTTTGATAATGATTTAAATATTTTTTACAGATTTTAAAAACTTTCGTCACTCGTTTCTCATTTACATCATAAAAAACAAACGCATAATTAGCATTCATTTGATTTTTCATTATTTTTTCTCCTTTAGATTAAATGGAATAAAAGAATT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAAATACATCTTATGTTTCTGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 15625-14934 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFCP01000041.1 Bacillus thuringiensis serovar jinghongiensis strain BGSC 4AR1 4AR1_contig000041, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 15624 30 100.0 36 .............................. ATTGCCTTAACTGTAAAGCTATATTCTTCAGCTTCT 15558 30 100.0 35 .............................. GGTAAATCGGGCAAATTGTCCATTGGGTCTTTTAT 15493 30 96.7 35 .....................C........ CTTGCTACACTTTCCAATAACCATGTCGGAATCCA 15428 30 96.7 37 .........A.................... TTTCAATTAGTCGTTTGTGATAAATGATTGCAAGTGC 15361 30 100.0 36 .............................. ATAAGTACAACGTCAAACTCTGTATATTCCCTTCTA 15295 30 100.0 37 .............................. CAAATGGTGGCTACCCGTGAAGGGTTTGAAATATGGT 15228 30 96.7 37 .........A.................... TGCTCTAAGACTACTGCATTCCCATACCCTCCAAATC 15161 30 93.3 36 ...A.....A.................... ATTTTATCTTCTAATGGTTTTCGTGGTCTTGGCATT 15095 30 93.3 36 .........A......A............. AAAGAAAAGGCAATGTGTGGTGCAACGAGTGTAAAA 15029 30 90.0 36 ......T..A......A............. TACAAATCTTATCATAACGTATGATTTAAAGAATTT 14963 30 76.7 0 A.....T.GA......A......A.....A | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 94.9 36 GTTGAACAATAACATATGATGTATTTAAAC # Left flank : AAAAGTATATAATCCTTCTTAAACTAGTAGCTGAATGGATAATCCAAAGGTACATCCCTTAATGGGGATGTGCCTTTTTTCGTAGAAAGGGGAATTATTAATGGATAAAAAGAAAAAACAACGTGTTAGACGTGTAATTATTATAGGGATTGTCGCAATGATTTTATTGATATACAGTGGGAACGAATTTCAGGAGAAGAATGGAAGAATCTATGCTCCTGCAAAGTATTTCGAGACGGGAACAAAATTAGTTTCATTTTAATCTTTTTCATATTTTCATCGAACAATATGGGGTAATACGGAAGTTGCCGAACGTTTTACCAGATTATTTACCAACCTAATTAATTGGTGATAACATGTAAATGTAGATAAAGTAAGGAAATTCTGCATAAATTATAAGTGAATGAGATTTATATCAATTAGCTGGTAAAAAACTTATAAACCCACGTTTCTATAGTATAATAGTGGATACAGGAAATAAAGAGCCAGTATTATTCGGT # Right flank : GCTAAAAAATGTTATTGGTTTAGGAAGTAATATGGTTAAATAATAAAGTAGAAAGTATTATAATTTCGAAATAAAAAGCACACTCTTGATTTGAACTGCCCCCTATAAAATAGGCAGTTTAATAAGAGTTGTGCTTTTTTATTTAAAACGGAAATATAAGGTAGGGAGGATAGAGTGCTGAATGAGCTCAGTATAATTTAATTGTTTACATTTTTGTAAAATAAATAAATCGTATTATTTATTATAATATGATATCCTATTTTTAGGAGGTGTGAAAATTTGAATTTTGAGTTAATAGTTACAACTTTATTGAAAGAAGATCTTCACTATGAGGATAGTTTGCAATTAATTGGTAGTTTCATAAACAAAGTGATGCTTCAAAGTGAAAAATTAAAAGCCTTGCATGAAAGAAAAGGTTATAAAAATTATGTTTTTAGCAATTTTTATCCATTTGAAAAAGATAAAATATACAAAAGTGGCCGAGTGTATGTATTTCGATT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATATGATGTATTTAAAC # Alternate repeat : GTTGAACAAAAACATATGATGTATTTAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //