Array 1 89485-90509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUF010000012.1 Listeria immobilis strain FSL L7-1485 NODE_12_length_97611_cov_66.938801, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 89485 36 100.0 30 .................................... TAGATGAAAATGGTGTGTTAAAAGAGAATG 89551 36 100.0 30 .................................... CAATCTTTCTGTTTGAATAATTTTCGCACC 89617 36 100.0 30 .................................... AGACTAAATTCTCCAAATTGTCTTTTGCTT 89683 36 100.0 30 .................................... ACGACCAAAAAAACCTAGACAAGTTAGTCT 89749 36 100.0 30 .................................... CCATTTCTCTCTACTGCCATTTCATATCCT 89815 36 100.0 30 .................................... AAGTTTAGCCATGTATTTAGCTGTGGTTTT 89881 36 100.0 30 .................................... TGATGCAGGTCAGTTATATGTCGATTCTGA 89947 36 100.0 30 .................................... CAGCAATGCAACTAATTCCTTGCGATTATC 90013 36 100.0 30 .................................... GACCAACAAAAAAAGAGCGCTCTACCACTA 90079 36 100.0 30 .................................... TTTGCGAGTTTTGCATCAGCTGAAATATTG 90145 36 100.0 30 .................................... GACGAATGTGCTTATAATTATAGGGCTTGT 90211 36 100.0 30 .................................... TTGTGATTTGCCATCATCAACAAAGTCACA 90277 36 100.0 29 .................................... TCATCTTCACTAATTTGTATTTTTTGCCC 90342 36 100.0 30 .................................... AATATAAATAAGAAATGAGATGTGTGTATG 90408 36 100.0 30 .................................... AATCATCGGGTGGTTTATCGTTTTACCAAT 90474 36 86.1 0 ..............C.........G.A..AA..... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : AATCAATGATTGATAAACTGACTGCGACAATTAGTGAATTGATAGGTTACGAACTATTAGAACATGAGCTTGATTTGGAAGAAGACGAAATCACGGTCATTGAATTATTTAAAGCCTTAGGAATAAAAATAGAAACGAAAAGCGATACTATTTTTGAGAAGTTAATTGAAATTGTGCAAGTTTATAAATATTTATCAAAGAAGAAACTATTAGTTTTCATTAATGTGTGTGCGTACCTTACAAAGGAAGAGTTGTTGGAATTAAAGCGGTATATTTCTTTATATCAGGTAAAAGTTTTATTTATAGAGCCTAGGAAAATAAAGGGATTTTCACAGATTATTTTAGATGCAGATTATTTTTTGGATATAGAAAATGGCATCTAAAGATTAAATGCTCTTTGAAAATAAAATATATTTAGTTCAACAGGCATTCAAAATTGAAATCTTGCTATGGATTAATGGCGCGATTACGAAATCTTAGAGACTAAAAATTTCTGCGAG # Right flank : CAAACCATCTAATTTCGGTTTGTTTTTTTATTTGCCTAGTATTCCTAGATTCTCAGCATAGCGAAATTTGATAGTGCAAGCTGGATTTAAAACGAAGGAAGTAAATCGGCAACCAACACATTCGTTAAAACTCCTGAAATGAGACCTGGCTAAAATAGCAGATGAATATTTTCACAATGTTGTTATTTCTATTTCTAAACAAGCTCATTTAGCTGTTGGCCCTCTTTTTTTAACAAGTTTAGTTAAAATGACAAAAGTAGTTCAATTTTACGGTTAAATTAGCGTATTTTTATGCAATTTTGTGTCATCTTACAGGAGCTGGGTGTGGTATAGTGTTATAGTCAGAGCTCAACCTATGAAGCGTTTTATTACACATACTACAAGAAGCTATTCTGCCTATTTAATAGACATCTACACTTTGCGGACGCTTATTATAAATTTTCTTAGAATAATAATGTAGTATAAATAAAATAAATCTTGATGAATTAGAAGTTTTAAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 408-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUF010000006.1 Listeria immobilis strain FSL L7-1485 NODE_6_length_155385_cov_43.038549, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 407 36 100.0 29 .................................... CGCGTACACACAAGCTATTGACAGACGAT 342 36 100.0 30 .................................... TCATTTAGCTGCTTCTATCATGCGAGCTAT 276 36 100.0 30 .................................... TCGAATTAATTTTATGCGTTTAAGTGGGGA 210 36 97.2 31 ...................C................ TGGGTTACAAGGGACGCGAATAACGATACAA 143 36 100.0 30 .................................... CGCAAATAACAAAACTCAACAATGCTATCC 77 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 99.5 30 GTTTTAGTCCTCTTTCATATAGAGGTAGTCTTTTAC # Left flank : CCTTGTTGTTTTTTTAAGCTTTCTTCTAATAATTGTGAGAGATTTATTTCTATTCTATATTCTTCGCTTTTGACAGGAGTATTTTCCTGAAAATAATATAAACTTTTTTTGAAACGATGATTGAAGGAATTTGTGATATTAAGTTTAGTGACATTCGAAACTTTGATTTTTCCTTGTTTATTTTTTTGTAATAATCCATGAAATAATTTTTTCATTTGCTCCGGATGACGAATAGTTTTGTTTACCACACTTGTGTAAAAAGAACTTTTTTTGCGATGCATAATTTGTTCAGTATTATCCTGCTTTTCACTTCCATAAACTAACCGTCCCCCGTATTTATCCCTAGACATTAGCACTTTTTTTCTATTAATCTCTACTTTGGTAATTCTCATAGTTTTCACCTCAATGATTTTTGTTCTCTCTCCTATTGTACATATAATCACAAAAAAATAAAACACCTAAATGATGGATAAGTGTTATTAGACTTATCCACATTAGAC # Right flank : CTCGAATTAATTTTATGCGTTTAAGTGGGGAGTTTTAGTCCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATATAGAGGTAGTCTTTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 114906-115259 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUF010000009.1 Listeria immobilis strain FSL L7-1485 NODE_9_length_128475_cov_56.125088, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 114906 29 100.0 36 ............................. CCAAATATCCCTCAGAATAATCCCCAACCACGTCAT 114971 29 100.0 37 ............................. GGCGTTGAAAAATCGGAGTCGAATTTTACATATACAA 115037 29 100.0 35 ............................. ATACAAGATGGAAAATACATACAATCAATCAAAGA 115101 29 96.6 36 ................A............ GTAGTAAGCAGTATATGAATATATTGGGTATCCTTT 115166 29 100.0 36 ............................. GCAGGTTACACGATTGATACCACACCCCCGTAAAGC 115231 29 79.3 0 ............C.C.A......A...CC | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 96.0 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCTGATATTCTACTAGAAAAGGGTGCTACAGAAGTAATTGCTTGTGCAACCCATTCAGTTATGGCTGGAGATGCAACAGAACGTTTACAAAACTCAAAAATCAAAGAAGTTATCACATCCGACTCCATCGACCTTCCAGAAGATAAACAATTTGAAAAACTAACCACCATCTCGATCTCTCGCATTCTTGGTCGAGCAATTGAAGGTGTTCAAGAAAACCGCTCATTACATCCATTGTTTTAAAATATCATTTAAAGTAGAGACACAGTGGCGTCTCTACTTTTTTTGCACACGAAAATCTGTCGACCGCTAGTAGTGCAAAAAACACGCTAGGTCGACAGAAATTTGTAATTACCTGCAGGAGAACGATTGAGACATTTTTACAGGCAATAAAGCATAGCAAACACCCTGATTCTTCCCAAAAATAAAGCCGGTCGACAAAAAGGGACTGTTGAGGTAAGATAGGAGTAAGAGGAAAATGGAGCGG # Right flank : CTGTTTAGCTCCATAACGTAGCTGTAGCGCACATTCTTAGTTAGCCTAGCTTCGATAAATAAGCAAAAATTAGAAATAAAAGTTTTAAACTGTTTTTCCCGACTTAATGACATAAAACAATAAAAAGACAAAAAGGGGAATATATTATGAAAAAAACATTATTTTTTTTACTTTTGCTATTATTTTTACTAGCTGGTTGCGCGGCGCAGGACGAAGAATTGTCCAAAGATACAGAAATTTATAAGGGAAATGTTATAAATGCTGATTATAAAGTGCCTCAAAACTTGACGGAACTTGCATCTGCCAGTGAAGATATTGTGCAGGTGAAATTAGTCCGAAATAAAAAGAGCGGCGAAGAAAACAATACAATAAGTGAAGTAGAAATAATTAAAAGTTACAAAGGTACATATAAAACAGGAAATAAAATTGATATTTCAGAGCCTTGGTTTTTAGTTGCCGGCAAATACCAAGCTGTTGAAAACTATATTGCCCTTGAAAAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //