Array 1 8938-7784 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGC02000004.1 Clostridioides difficile strain WCHCD070103 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 8937 29 100.0 38 ............................. AGGCATACGTTTTAACAGAATTTGGAGAGAGACATATA 8870 29 100.0 37 ............................. ATTAAATTTGCATATTCTTCAACAATTTTCTTTTGCC 8804 29 100.0 38 ............................. TAGTCTAAGACCTGTCCAAAATAAAATTTCAAATGCTA 8737 29 100.0 37 ............................. GGGCTAAAAGAAAAAATAGAGAAAAATATATCTGAAC 8671 29 100.0 37 ............................. AACAATAGGCTACTGGCTCGGAATGAATTTTTTTTCA 8605 29 100.0 36 ............................. CTGATTTTATGCAATTATATATTTCTCCAGTTCTCT 8540 29 100.0 36 ............................. TATAAATACAACAACCACACTCTGCATCACATTTAA 8475 29 100.0 37 ............................. GGAATCCCTTGGAAGGCAAAGTCAAAAATAAACATTC 8409 29 100.0 37 ............................. CCTTATACAATGAATTGCATAACATCTTATGGTATTC 8343 29 100.0 38 ............................. AAGATTTTTCCTAACAGATGGTTAGAGGGAGATATAAG 8276 29 100.0 38 ............................. ATAAAAAGTCTCACGATAGTCTCCAAAAAGTCTCAAAA 8209 29 100.0 38 ............................. TGCACTTTTACACCTTTTTGGTAAGCATACTCAACCAT 8142 29 100.0 37 ............................. ATTGGTCTTGCAATTGGTGGTGCCTATTTGGTTTGGA 8076 29 100.0 38 ............................. AAAATCATGATTATGTTCTAAATAGTAATCAAGAGATT 8009 29 100.0 37 ............................. CTAAAATATCTTTCAACCTTTAACATTTCAGCCCCCT 7943 29 96.6 36 ...............A............. CCTCTCAAAGAAGTAACAGGTGAAGAACCTTCTTAA 7878 29 93.1 37 ...............A............T AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 7812 29 69.0 0 ......C........AAAT....AG..TA | ========== ====== ====== ====== ============================= ====================================== ================== 18 29 97.7 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : TTAAATATCTAGGGTTTTATTTGACGTGCTCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATGAATATAATAAAAAAAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTACATGTTTTAACTGTATAAAACAGTGGGTATAGTTCAGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGTATATGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAACATGTATTTATACTTAAATTCTGTATCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAAATGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATGCTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 30144-28334 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGC02000010.1 Clostridioides difficile strain WCHCD070103 10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 30143 29 100.0 37 ............................. TTGCGACTGTTTTCTATTTCAAGTACTTTGCAATCTA 30077 29 100.0 37 ............................. TGTTGTTACATGTGTAAATATTCACTTTTAATCTATT 30011 29 100.0 37 ............................. AATTCTTTAGCACAATAATTTTTTTCGTTTAAACAAT 29945 29 100.0 36 ............................. CCGCTAAAACCTCATCTTTTAAAATTTGATTAGCTA 29880 29 100.0 37 ............................. ATGTCTTTTTCTCCTATTATAACTATATCTGTTATGT 29814 29 100.0 37 ............................. ATTCTTTTATTTCCGTCAATGAAACAATGGTTACTTA 29748 29 100.0 39 ............................. AGTTTGAACTGCTATCGCTTCAACTTTTCCTTGTATATC 29680 29 100.0 38 ............................. AATACTGAACCAGGAACAAGAAAAAGAATTAGAATTAA 29613 29 100.0 35 ............................. GATTTATCAGTTTACTTTAGAAATCGCTCAGATAG 29549 29 100.0 37 ............................. GAAGTAGGCAAATCATAAGGAGGATTATTTTCTCCAA 29483 29 100.0 38 ............................. TGAGGGGTGCGTAAGCGATATATTTAAACAATATTCTT 29416 29 100.0 36 ............................. ACAAAATTATCTAAAATAAAATTAGGAGAAACTCTA 29351 29 100.0 36 ............................. TATGAATAGTAATTATACAAAATACATATTATAGGT 29286 29 100.0 37 ............................. CTTTTAGCTTTTTTGTTAGTGTTCTTTATTGCTGTTA 29220 29 100.0 38 ............................. CAAAAAGTCTTGAATAATCTTTCAGGTTATATTTTAAA 29153 29 100.0 36 ............................. CAATTGGAACTTTCTGCATCTGTGCGAGGTGTGTCT 29088 29 100.0 37 ............................. TGATACAAATACTTTTTCTTTAACTCCAAGTTCTTTT 29022 29 96.6 38 ............................G ATCTCTGCTCTCTTTTGCAAATTGAGAATCTTTTAATA 28955 29 96.6 37 ............................G GGAGATACATTAAAAGGAGAGATAGCATTTGAACTTA 28889 29 96.6 35 ............................G TCTTTTTTAAGATCGTTTATATTATCCATTGCAGT 28825 29 96.6 38 ............................G ATATATACCATCTTTAGTTTTACTTTTCTTTTTACATG 28758 29 96.6 38 ............................G TTGAGAAGTATTCATTTTAAGTTTTTCTTTTAAATGTT 28691 29 96.6 37 ............................G ACACTTTCAAGTATTCTTTAAACTCTTTTAATGTAAC 28625 29 96.6 39 ............................G ATTGAAAGCAATCAAGTTTATCTTTCTTCTTATATAAAT 28557 29 96.6 37 ............................G TTTTGAGTGTATGTTTCTTTTGTTTTATTATTTAAGA 28491 29 89.7 36 ......................GA...G. AGAATATTAGCAATATCAACGAGTGTTTAGAAACTT 28426 29 75.9 35 ............TA...CA....A...GA TTGTAGAATCAACAATAGCATATACTAAATCAGCA 28362 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ======================================= ================== 28 29 96.9 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAAGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATTAAACAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATGCTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGGTGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGAGTACAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 324-1211 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGC02000055.1 Clostridioides difficile strain WCHCD070103 55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 324 29 100.0 38 ............................. ATAGTTTTCAAAGATGGAAATATGAACGAATGGTTAAG 391 29 100.0 36 ............................. TGACTCTGCTTATAGCTTTATTAGTCTGCTCTCTAC 456 29 100.0 38 ............................. TAGTAAAAATGGAGATTATCATTTTTGTGAGTTTATAG 523 29 100.0 36 ............................. TGATAAAATGACTATAATTAGAAAATTAAAAGGCTG 588 29 100.0 37 ............................. TTAATTACCTTCAAAATTCATATATTTTAAAACTTCC 654 29 100.0 35 ............................. ATTCAACTTGGATTGCTTTTTCAAATTCAGCTAGA 718 29 100.0 42 ............................. AAAAAATAGAAATGAGGTGATAAAGTTGGCAGAACAACAATA 789 29 100.0 36 ............................. TCATATCAGAATCATTCGGAGTAAATCCGAAACTCA 854 29 100.0 36 ............................. ACAAAAACATCACCAGAAGGAACTCCTATTAAATCA 919 29 100.0 37 ............................. GTTTCAGCTACTCATTGGATAAAAAGAAAGTATTTTG 985 29 100.0 37 ............................. AATTTATAGAAATTCTTATAGCATCAGTTGTTTCTAT 1051 29 100.0 37 ............................. TAACATATTTTTCCAATAGATTTAGTTTTTTATTTAA 1117 29 89.7 37 ......T.........G...T........ ATGTATATCCCAGCAATACTTTTTAGTTTAGACACTA 1183 29 82.8 0 ......T.........G....C.TA.... | ========== ====== ====== ====== ============================= ========================================== ================== 14 29 98.0 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : GAATAGCGAAGAAAAGTTTCAAGAATATGCAGAGATATTAAGAAGTATTCTTAGGGAACAACAGGAGAGAGAAAATAAGTAAAATAAATAGATAAAGTACTTGGATATTATGTTGTTTCAAGTGTTTTATATGGTGAAAAGTGGTATAATAGAGATAGAAGTTTTGCAGTGAGCGATATTTGTGATAAAATATGGCTTAATACTTGAAATATAAGGCATTGAGAACGTATGATAAGTGTTATCAATTGCACTATTGGTCGCTCACTGCAAATTTAAGAGAGTTGTATATGTGTAGGTATTGGAAATACTAAGTTTATTTTGGGG # Right flank : TTAAAAATAATTAAAAAACACTTACTTAGGTAGGTGTTTTTTTAGTTGAAAGTAGGTGATTATAACGTAAAAAGTAATAAACAGGTAAAATATGTAAGTAATATATGATATAATATTTTTAGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGTATATGTATGGATAATTTTTTGTTTAATGTTTTGGCTAGTTTAACAGCTAGTATAATAGTTTACTTAATTAGTAAATTAATTAAAGCCAAAAAAGCAAAAAGCCACTCTCGCCCAAAGAGTGACTTATTAGTTGAATTTAAATTTCTATTTAAATTCAAAAAATGATTAAGTTCTAATTATGAACTTCACTCTACCGCAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATATAAATAGTTTTGCAGTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 1863-3475 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGC02000055.1 Clostridioides difficile strain WCHCD070103 55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1863 29 100.0 36 ............................. TCTACAATCAACTTAGCAATACCTTCATGACCTAGT 1928 29 100.0 39 ............................. TTTCTTAATCCTCCTCGTTTTTCGCAAAAAATAAGAATC 1996 29 100.0 38 ............................. TAATTTTCTGCTGAGTCAACTTTAGGTGATATTTTCAC 2063 29 100.0 37 ............................. TCTAAAACACCCATTCTATACGCATATTCTTTTTCAA 2129 29 100.0 37 ............................. GCTAGAGGGGCATCTTTGAGGATTTTAGGAAAATTAG 2195 29 100.0 37 ............................. TATGTAAGCAGAGACAAAATAGAAGTTGATTATGTGC 2261 29 100.0 37 ............................. TAACATTAGGGTTTTCTCTTGTTATGCCCATTTCATC 2327 29 100.0 37 ............................. TTCATAGACCAAGCGTTCTGCTTACACTTAATAGAAA 2393 29 100.0 37 ............................. TGTATTTGTCTAACACGATACAAAGCAAAAAATAAAG 2459 29 100.0 37 ............................. TCCGCATATGGAATGTAAATCCTAATGGTACCAGAGG 2525 29 100.0 38 ............................. GACGCAACAGCAAGAGTTGCAATAACATTGACAACCTC 2592 29 100.0 37 ............................. CTATGTCTATATGTTTCTTAATAGTATAAACTCTTAT 2658 29 100.0 37 ............................. CTAAATCTAATAGCATATTCAAGATGTTTTTCTTCTC 2724 29 100.0 36 ............................. ATTCATATATTAGATTTAATTTTCCTAATAAAAGTA 2789 29 100.0 37 ............................. ATATAAGAGCTTATTATACTAGAGCGACTTGGGATAG 2855 29 100.0 35 ............................. CTGAGAAGCGCTGTCACAAAACACTGTGTAAAAGT 2919 29 100.0 37 ............................. ACAACTCCTGCTATAATTGGACCTATTATACTCCAGT 2985 29 100.0 37 ............................. GGAACTTATTATGGAGCTTGGAGAAACGGGCCAAGCG 3051 29 100.0 37 ............................. GCTCTTGTCGCAGTTGCTCCTGAAATTATTGATGTTG 3117 29 100.0 38 ............................. ACTTACTTACAACAGCAAATTTATCACCTATTTTAAAG 3184 29 100.0 37 ............................. TGTTTATTATATTATCATTGCGTCACCTTTGCGTCAA 3250 29 100.0 37 ............................. ATTTTTTTGAAAGAATTAAGTGAAAGTATAGAAAATT 3316 29 100.0 37 ............................. TTTACAGAAACTATAAGACTATCTCCTTTTTCTAACT 3382 29 93.1 36 ...............T....T........ AGCGCATCCGCTGCGTCTTTAGCTGTTTTTGATGTA 3447 29 75.9 0 A.....T........T.....T.CA...C | ========== ====== ====== ====== ============================= ======================================= ================== 25 29 98.8 37 GTTTTAGATTAACTAAGTGGAATGTAAAT # Left flank : GGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGTATATGTATGGATAATTTTTTGTTTAATGTTTTGGCTAGTTTAACAGCTAGTATAATAGTTTACTTAATTAGTAAATTAATTAAAGCCAAAAAAGCAAAAAGCCACTCTCGCCCAAAGAGTGACTTATTAGTTGAATTTAAATTTCTATTTAAATTCAAAAAATGATTAAGTTCTAATTATGAACTTCACTCTACCGCAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATATAAATAGTTTTGCAGTGTTCGATTTCTTGAACAAAATAGGGCTTAAGCATTGAAATGTAAGGTATTGAGAGTATATGATAAGCATTATCATTTGCACTACTGGTCGCTCACTGCAAATTTAAGAGAGTTGTATATGTGTAGGTATTGAAAATACTTAGTTTATTTTGGG # Right flank : CTAAATAAACAAAGAAAGCACTTACTTTTTGGTAGGTGCTTTTGTTTTGCTCAAATTGGTCGGTTGGGTAAAATAATTAGAAAAAATTAGTAAAAACCTATTGAATTATTGGCAGACATCAATTATAATAATAAGTGTCAGCCAATAATTATACAGGAGGTGATTACTATAACTAAAAATAAGGTTGGCAGACCTAAAACGGAAACTGCTATGAACAAAAGGATTACAGTTAGATTAGATAGTAAGCATGAAGAAATTTTAGAAACATATACAAAAAAATATAGCATTACTAAAAATGAAGCTGTAAGAAAAGGTATTGAGAAGTTAGAAGAGAAGGAATAAAAAATAAGGGTCACTCCCACCGACCAAAGTTTGAGTAACCCTTATGACGTATACTATCGTATATCAAGTATAGTATACGTCATTCCTTAAAAAAAATCAATTATTAAGGAGTGTAAAATTATGAAAAATGAATTAATGATGTTTGAAGAAAAGAAAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTAAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 59822-61171 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGC02000008.1 Clostridioides difficile strain WCHCD070103 8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 59822 29 100.0 37 ............................. CACTCCTGTTTATGTTATAATAATCTTGGATAAAAGC 59888 29 100.0 36 ............................. AAACTTTTGGTGTCGCTTTTATACCTAATTTATCAA 59953 29 100.0 37 ............................. TTTTTTATGCAACCCTTTTTTGGGGTGCAGTTGCGAG 60019 29 100.0 36 ............................. ACTTCTCGTATTATCTTATAAGCCATGACTCTGCTT 60084 29 100.0 36 ............................. TAAAATATTCTGGGATTTAAATCCCGATAATCCTAA 60149 29 100.0 37 ............................. CAGGACAAATTTAATAAATATGCAATAAGAGCAACTA 60215 29 100.0 38 ............................. TTTAAATATTATGAACTAGAAGAAAATGAAAAGAATAA 60282 29 100.0 38 ............................. TCAATGAAACAATGGTTACTTATTAAACTATGTGTCGT 60349 29 100.0 38 ............................. CCTTATGAATTTAGTTTTACTAATTTTAAAATAGTTAC 60416 29 100.0 36 ............................. AAAGATTATCAGAAGAATTAATACAGACTGAAGATG 60481 29 100.0 38 ............................. CGGAGTATTGTAATAAGCAATAAAAGCATACCTATTTG 60548 29 100.0 37 ............................. CTACTAAAATTATAAATACTATTTGATACTAAATTCT 60614 29 100.0 37 ............................. TGTTTATTATTTATAATATTTTCATTTAATTTATCTT 60680 29 100.0 37 ............................. TCCTTCAATCTTGATTAATCCTTCTTCTGTTATCCAG 60746 29 100.0 37 ............................. GCTGGTAAGTTTGATTTTATATCATGGTAGTAAGCAG 60812 29 100.0 37 ............................. CTTATAGTAACGTCCATTAAATAGCTATCTTTTGCTC 60878 29 100.0 37 ............................. GAAAAATTTATTTTAAATAAAAGAACTAGCGACTCAA 60944 29 100.0 38 ............................. AACGATTCAGTATCTTGTTGCAACCCTTGACCACTTTC 61011 29 100.0 37 ............................. CATGAACATTCTCTATAATATGTGTGTTCTTCAACTA 61077 29 100.0 37 ............................. GCTGTATTTATAATTTTTTATATTTGAGTAAATTAGC 61143 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 21 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TACTATTATATATAACTGAATATCTAAGTGACATTTAAGAAAAATATGATGCTTACTGACATAAAACTGAACGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTCTTTATCCATATCGTCTAAAATAAGAAAATATCTATTCATAGTTATTTTTATATCAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAACTATTAGAATAGATAATATAGTAAGCATTTACAGATATGCAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATATAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTCTTATTGATTAAAATATAAGAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATAACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATAAATATTCATACTATAATTTAGATATAAGGAGATGTCCTTATAAACTTAAAGGGTTTGTACTATTTGTACTATAAGTATTGATAATCTTAAAGTATATATACTATTTGTATTTGTTGAAAAAGATTTTAATAGTAATACAATATTAAACAACACAAATATCAAAATTTAATATTGATATAGGTATAAACATTATAAAAACAACTGAAAATAAAAATCAAGAAATATTTAATGCTACTACAATAGGAACTAGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2167-3382 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGC02000063.1 Clostridioides difficile strain WCHCD070103 63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 2167 29 100.0 36 ............................. CTTGTAAAATCTCTTATACTAGAAAAATCTAATCCT 2232 29 100.0 37 ............................. GAGATTATCAATGTTGTTGCAACTCTTGCTGTTGCGT 2298 29 100.0 37 ............................. TTGCCTACCTTATGAGTTCTCTGTTTATTTTTAACTT 2364 29 100.0 37 ............................. AATTTGAACTTGATGACACAGTAATAATGTTTAAAAT 2430 29 100.0 37 ............................. GAGATTGTTAGCGTTGTTTCAACTCTTGCTGTTGCGT 2496 29 100.0 37 ............................. AAAATTATATCGTTAAAAACATTAATAAGCACAATAA 2562 29 100.0 40 ............................. TGCTCATTAAATCAGATTTATTAAATTCTCTGAATTTTTC 2631 29 100.0 37 ............................. CCTTTCATTAGTCATTTTTTGCATAAAAAAAAGAACT 2697 29 100.0 37 ............................. TCAGGATGAAACTTACTAGGCAAATCATAATACTCAA 2763 29 100.0 36 ............................. ACCCTTCGTACGTTCATGCGTACGACTGTACGTGTA 2828 29 100.0 37 ............................. CCCAAATGTATTTATAGCTGTAGCTTTTATTGCATTC 2894 29 100.0 35 ............................. GTTAGTGTATGACCTGCTGTTACTGCTACTCTCAT 2958 29 100.0 37 ............................. TCAAAAATATTTATATCGAAATCTTTGAATTGACATT 3024 29 100.0 37 ............................. CCAACTAACTCTTCATAATCCATACTCGTTAACTTTG 3090 29 100.0 37 ............................. ATAAGAGTGGTTTAAAAAAATAGTTCTTTAAATCAAT 3156 29 100.0 37 ............................. GCGAGGGAAGTTTTTCAAAAGAATTGTATAGTTGAAA 3222 29 86.2 37 ......T.........G...T.......G TTGTTGAAGTCGTCGAATTAGAAAGTAGTTCAAAAGT 3288 29 82.8 37 ......T........AG...T.......G ATAGATGCTCCCCAACATAAAATACCTTCAAAGACAG 3354 29 86.2 0 ......T........AG...T........ | ========== ====== ====== ====== ============================= ======================================== ================== 19 29 97.6 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ATACTAGGATAAAACCTACTTCCTAATGAAAGGAGGTGGGAAGTATGGACAACTTTTTACTTAGTATATTAGCTAGCTTGATAGCTAGTTTAATTGGATATATCGTTTGTAGATGTATCAAAAACGTAAAAAGCCACTCTACTCGTGGCAAGAGTAAAAGTGGCTGGGAACTTGATTTTAAAATAAAGTTCCGCAAATTTAAATAATTTATATTTTTTAAAATTATGAACTTCACTCTACCGCTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATATAAATAGTTTTGCAGTGAGCGATATTTGTGATAAAATATGGCTTAACACTTGAAATATAAGGTGTTAAGGGTGTATGATAAGTGTTATCATTTGCATTACTCATGGTTCACTGCAAATTTGAGATAGTTGTATATGTGTAGGTATTGGAAATACTAAGTTTATTTTGGG # Right flank : TACATTGTAGGTGGGTGGTGAAACACCACATACATTGTTTTATGTTCAAAACTAAATAGAAAAAAGGAAGCACTTACTTTTGGTAGGTGCTTTTGTTTTGCTCAAAATTGGTCGGTTGAGTAAAATAATTAGAAAAAATTGGTAAAAACCTATTGCTTTATTGTACGTACTATATTATAATTTAAGTACGGACGATAAAAAGAGAGGTGATAAGATGTCTAATAAATTAGGCAGACCACCAAAAGAAAATTCCAAAAAATTAAGATTTGAAGTTAGACTTAACCAAGAACAAGCTGATATATTGAATGAATGTGCTGAGAATCTTAAAATATCTAAAACAGATGTAGTAATTAGAGGGATTGAATTGGTGAAAGAGAAGCTTGACAAAAACAAATAAAAAACAGCCGCTGCACCGACCAAAGCACTTGCGACTGTTTCCCAAAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 96500-97675 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGC02000013.1 Clostridioides difficile strain WCHCD070103 13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 96500 29 100.0 36 ............................. CCCTTCTATCTAGAAAAAGTTTAAGTCCTTTTCAAG 96565 29 100.0 37 ............................. ATTTCTAAATTACTGTTTATTGCGTAATCTTGTGGTC 96631 29 100.0 37 ............................. TTGCGACTGTTTTCTATTTCAAGTACTTTGCAATCTA 96697 29 100.0 38 ............................. TATATTTCGTCTTCTCTTTCATCTACAAGAACATTAAA 96764 29 100.0 37 ............................. TGTTACTTTAATTTCTCCAGTTTCCATTTTCTTTTTC 96830 29 100.0 38 ............................. AATTTTTAGACATTCAATTATATAAATAAAAAAAATAC 96897 29 100.0 37 ............................. TATCGTACTTTCCAAGAAGTAGAGCAACCAGAAAGTG 96963 29 100.0 36 ............................. CTTTCATGAGCAACCTCCTAATTTATTTAACATTTA 97028 29 100.0 38 ............................. AACTTTTCTTTCTGACTCTTTTTAATAATCTCGTCTAG 97095 29 100.0 37 ............................. GACGAATTAAATGAAGAGCTACATAGACAATCTCAAA 97161 29 100.0 38 ............................. CTAGCAAAATTTGATAAAAGGTACTATTATTGTAGTAT 97228 29 100.0 37 ............................. TTCATATTCCAAACATTTTGCTTACACTTAATCGAAA 97294 29 100.0 37 ............................. AGGAAACGTTGAAACGGCAGTTGTTTCACCTTTTACT 97360 29 100.0 61 ............................. TATTAACTATGTGGTATGTAAAGATAGCAACTGGTAGCAACATAGCACTTATACTTGTAGC 97450 29 86.2 38 A...............G...T.......G CCCATAGAACCAACATATTTAAATGTTTCACCCATTAG 97517 29 82.8 36 A..............AG...T.......G AACTCTGCAAAGCTAGATTTTAAGTTATCAAAAACT 97582 29 82.8 36 A..............AGA..T........ TCTTTAAAAGCATTGAAAGCATCACTCATACATTGT 97647 29 79.3 0 ...............AG....T.CA...C | ========== ====== ====== ====== ============================= ============================================================= ================== 18 29 96.2 39 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCAACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGATTTATGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : CTAAATAAACAAAGGAAGCACTTACTTTTTGGTAGGTGCTTTTATTTTGCTCAAATTGGTCGGTTGAGTAAAATAATTAGGAAAAATTGGTATAAGTAATTGACTTTTGTTGCCACATAAATTATAATATATTTGTAGCAACAAAAGTGAGGTGAAATAAATGCCACAAAAAAAGATGGGTCGTCCAACAGAAAGTGTAAAAGATACTATGATTAGAGTAAGAGCTGACAAAGATACTATTGATAAGTTAGATGAATGTGTGAATTTATTAGATAGTAATCGTTCTGAAATAATAAGAAAAGGTATAGACAAAATATATGATGACCTAAAAAAATAACAAAAATAGAGTGTTCGCCCGACCAAGTTTGAACACTCTATTTAAACACCAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAATTTAAGGAGGAATTTACTATGAATGAATTAATGAATTTTGAAGGAAAAGAGATTGA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 44973-45667 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGC02000024.1 Clostridioides difficile strain WCHCD070103 24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 44973 29 100.0 37 ............................. TCATTAAAATTATTAAATTTTATTTTTTTCATATCTA 45039 29 100.0 37 ............................. TCATTTGTAAGCGGTGCCATAATTTCAGTTCCTAATG 45105 29 100.0 40 ............................. TGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACT 45174 29 100.0 37 ............................. GCACCAGAAAAGAAACCAGAAAGCAAAAAACCATTAA 45240 29 100.0 38 ............................. TAATGGTGACGCTAGACAAGCAGAAGTTATTATTATAT 45307 29 100.0 38 ............................. TAATTAATGGTGTTATTAAGTCAAATTTTTGATTTTGC 45374 29 100.0 37 ............................. ATTTTTGTAATATTATAGAATCATCCTAAAACAAAAG 45440 29 100.0 38 ............................. CATAAAGAAAATTCTTCTAAGATTGAAATATATAATAG 45507 29 100.0 37 ............................. GAGCTTCTATTCCAGTCATATGTATCACATCCTTTTT 45573 29 100.0 37 ............................. CCTGCTGTTACATATGCTTCTAACATTTGTTGCATAC 45639 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 99.7 38 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAAAAGTAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGAG # Right flank : TTTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGTATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 182808-183035 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBGC02000003.1 Clostridioides difficile strain WCHCD070103 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 182808 29 100.0 38 ............................. TAAAAGCTCTCTAATTGCTTTTTTAAACTTCTTTTCAG 182875 29 100.0 37 ............................. AGTTTGATTATCTTCTCATCATTTGGTATAACATATA 182941 29 100.0 37 ............................. ACGAGTTGTCATGATGATGGAGACACAAGTTTTACAG 183007 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 100.0 38 TTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TTTATATGTTATAATAATTGTAGCAAGGATAATAATCGAAAGTGCGAAGGGTGATTATTTTCATATTAAACGCCAAATTCCAAATAAGGAAGGAGGTGAAATTATATGATAGTTTTTTTATTAAGCATACTAGCTGGTGTTATATCAGCTTATATTTATGACAAAATAAAAAATCACCCAAACGCCAATAAGGGTGATTTAAAAAAATAATATTTTCACTTAACAACTGAAAATAATCACTCTTTGTAGGAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATATAGAAGCTTTGCAGTGAGCGGTATTTGTGATAAAATATGGCTTAACACTTGAAATGTAAGGCATTGAGAACATGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGTATAGATGTAAGTATTGAAAATACTCAATTTATTTTGGG # Right flank : TTTAAAACTAGCTCTTCTGTACTAACACATACATAAAGTGCTACTCTTAACAACATTTTACCTTCCCCCTTATTGTATATTTAAGAGCAGCTGAACGGCTCTTAAATATACTATGAATTGTTACAAAAAATTTGCATTCATAATACTAAATCTTGGCTCAAAAAATATCACATAATTATCTAGAGTGGCTGAAAAACCATATTTACTTTTATAACATTCTAAGGCTTCATTTAGAAACTTTTCAGTTACATCAAGGTATTCTGTCATTTCAGATATAGTCTTACAACCAGCATTAAAACTATCTATTATGCCTTTAAGACCAATTAACTTATTATAAGCCATTAATCTAGCTTTATATTCTTGTTTACTATTTTCAATTTTATTTAAGTCTAAAATATTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //