Array 1 649946-654140 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061019.1 Streptococcus thermophilus strain 24853 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 649946 36 100.0 30 .................................... AGTTTTTGAAAGATTTATCTTACGACGATT 650012 36 100.0 30 .................................... TGCCCGCTCGTTTAGCACCGTGTAGTCCAC 650078 36 100.0 30 .................................... TTTCCAAGGTCTTGCCCGTGATAGTGGCTC 650144 36 100.0 30 .................................... ACGAGCATTGACTTACATCAAACCACTAGA 650210 36 100.0 30 .................................... GTCGATACAGAACAACGTGCTGCAAGAGCT 650276 36 100.0 30 .................................... ATCTATTCCACCTCTTCAATCACAATGCCT 650342 36 100.0 30 .................................... TTGGAAAATAGTTAAAATAAAGAGAGAGGT 650408 36 100.0 30 .................................... GAGCCTGCGCACGATCTGCGCTATTTGCAT 650474 36 100.0 30 .................................... TCTATATAGAGGCCAACTCACAATCATGCT 650540 36 100.0 30 .................................... ATTTTGAAAACAAAACAACATTAAAGCCCT 650606 36 100.0 30 .................................... TACTCCGTCAACAAGATTTTTAGTATCATC 650672 36 100.0 30 .................................... TCCTTAATTTCCTAATCAAAAAAAGACAAC 650738 36 100.0 30 .................................... CTGCCAGTAGTGGTAATTGATTAGCTTATT 650804 36 100.0 30 .................................... GTATATCCGTGTGTTTGTCTAGCTTTCCCT 650870 36 100.0 30 .................................... AAGTAATAAAAAATCTTGGTGGAAATTTTG 650936 36 100.0 30 .................................... AGGAGCTTATCCTGATTGTACTCCTAATTT 651002 36 100.0 30 .................................... ACATTATTCTTGACCCGTCAGCTTCTGCAA 651068 36 100.0 30 .................................... TCTTGTTGACAATGAGGTTGACATTATCTA 651134 36 100.0 30 .................................... TTACTATACGTGAATTAGAAAATAATTGTA 651200 36 100.0 30 .................................... AGCACCAACTGATAGGGTTGTGATGACCTA 651266 36 100.0 31 .................................... TAAATGGGTTAGGTTTTATAACTTTGGTAGA 651333 36 100.0 30 .................................... TGACGCAATCAAAAACGATTCCGGAACCGC 651399 36 100.0 30 .................................... AAGTGTTATCATCGAGCTTGAAACTAAAAT 651465 36 100.0 30 .................................... CTATCACCATCAGCAATTACTTCGATACCG 651531 36 100.0 30 .................................... TGAAAACGAAGGATTTGATATTAGTAACGC 651597 36 100.0 30 .................................... CACAGCTAGAAATAGCAGACTATGAAACAT 651663 36 100.0 30 .................................... GTCGAACGGTTTATTCCCAGTTCCTTTTCT 651729 36 100.0 30 .................................... GAAGCTATCTCAACAGCAGCTCAAGGTATC 651795 36 100.0 30 .................................... CCAGTTCAGCCAAAACCAAAGCTGGGTTCT 651861 36 100.0 30 .................................... GTCGATACAGAACAACGTGCTGCAAGAATT 651927 36 100.0 29 .................................... TTACTATGACATGTTCAAAAAGCAACTTC 651992 36 100.0 30 .................................... ATTCATTAATATCTGCAAGGATGTCTTGTT 652058 36 100.0 30 .................................... GCTAAGATATAGATAGGTTCATCTACACCT 652124 36 100.0 30 .................................... TTCCGGAACAGCCAATAAAATGTCGAATAT 652190 36 100.0 30 .................................... TATTGTAAACAAAGCAGTCCAAACTGCTTT 652256 36 100.0 30 .................................... ACATTATCAAGTGAAGACACAAAGAAAGGA 652322 36 100.0 30 .................................... GTATGTTTCACCATGTAAGAGAGCAAGCGG 652388 36 100.0 30 .................................... ATATTCTTCTGGATTTGTACTGTCTTCTTT 652454 36 100.0 29 .................................... GTGGCTATGACTAAAGCATTAGCAAATCA 652519 36 100.0 30 .................................... GCTAAATATGTATTTAATAAGTATGAATGG 652585 36 100.0 30 .................................... TACATCGTGGAAAAACAGTTAAAGCTTCTA 652651 36 100.0 30 .................................... ATAAACTATGAAATTTTATAATTTTTAAGA 652717 36 100.0 31 .................................... CCAAAAAGTACGAATGAAACTCATCCCAGCG 652784 36 100.0 30 .................................... GAGCAAGCTGAAGGTAGCTTCACAATCCTT 652850 36 100.0 30 .................................... GGGAAAACGGTTTGACGATTGCAAGACGTA 652916 36 100.0 30 .................................... CTGACTTTGGCGTGTCATTGCTTGAAGCAC 652982 36 100.0 30 .................................... AAATGACGGAACGTATAAAGGTCTAACCGT 653048 36 100.0 30 .................................... ACAGTAGAAACGCCAAAATGGACGTCATGG 653114 36 100.0 30 .................................... CTTTTTTGGCAATCCAACCTGAGAGCCAAG 653180 36 100.0 30 .................................... TGCAAACAAAACAGTGCGATCGCTTGCAAG 653246 36 100.0 30 .................................... AATTAAGGGCATAGAAAGGGAGACAACATG 653312 36 100.0 30 .................................... CGATATTTAAAATCATTTTCATAACTTCAT 653378 36 100.0 30 .................................... TCTCATAATCACCGATACCGTCAACATTGT 653444 36 100.0 31 .................................... TTCAATTCTTTTACATTATACTTACCGGGTG 653511 36 100.0 30 .................................... CACTTGAGCAGTTACCAGATGAGAAGTTAT 653577 36 100.0 30 .................................... AACAGTATACTTCTAATTGTGATTTTCCCG 653643 36 100.0 30 .................................... AGTAAATACTGAGAGGTTCTTTATATGAGT 653709 36 100.0 30 .................................... TTGGCCGATGCTAGTGCACGAGTAGTGAAA 653775 36 100.0 30 .................................... CAAACTTGGGTTTGTCAACGTTTGACTTGT 653841 36 100.0 30 .................................... TAAAAATTTATGGTAAATTACCGAATACAC 653907 36 100.0 30 .................................... CAACCGCATCTGCATCTGCGGCTGCGATTG 653973 36 100.0 30 .................................... CCTCCGTAAAGTGTCGGCCAGATACCGACA 654039 36 100.0 30 .................................... AACGAGCATTGAACTATGACGAACCACTAG 654105 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 64 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 893130-894249 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061019.1 Streptococcus thermophilus strain 24853 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 893130 36 100.0 36 .................................... TCTAACATGGTCAGCTCGAAGCATTGCTTGGTGAGA 893202 36 100.0 39 .................................... ATATATTAGTATTGATATTATTAGTATTGATTCCCTGTA 893277 36 100.0 35 .................................... TGTATTTTCATTTACTTTATAGCTAAAGTGTTTAA 893348 36 100.0 38 .................................... TCATGATATTTATTATCTGCCGAATGATTTGATAAGCG 893422 36 100.0 36 .................................... GCGAATTCTTCTTGTGTCAGGTTATGACGTGCTCGA 893494 36 100.0 36 .................................... AGACATATAGCTTTTGTCAGCATAATAATTATCATC 893566 36 100.0 36 .................................... TGGGTACGAATACCAACCAGTACAGCGGTCTTTTGA 893638 36 100.0 36 .................................... TTCGTACTGCTCTTGTGCTTTGATAGTGTTCTTTTG 893710 36 100.0 34 .................................... ATAAAGTTACTAAAGTTTACACTTATTGCCCCTT 893780 36 100.0 34 .................................... TGGTAGCGTATGTTCTAACTGGCATTATTATTTC 893850 36 100.0 40 .................................... GTGGCAGTAACTTTAACTTTAATAGAAGCACTCATGATTA 893926 36 97.2 35 ......A............................. TCTTTCTTGATAATATTCAAAGATATTGAAATTAG 893997 36 97.2 37 ......A............................. ATATTTGCAACTCGATTTTCAGCTACTCCGGCAATAG 894070 36 97.2 38 ......A............................. CGTTTGTTTAATTGCAATAATGCTCGCAAACTATCAAG 894144 36 94.4 34 ......A..........T.................. GCTCCTACCCATTGTGGCTCATTCATTTGCTTTA 894214 36 80.6 0 ......A.......................TTTTTT | ========== ====== ====== ====== ==================================== ======================================== ================== 16 36 97.9 36 GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1370891-1369533 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061019.1 Streptococcus thermophilus strain 24853 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1370890 36 100.0 30 .................................... AAGAAGCCCTTCTAGTTGTATCACCTTTCT 1370824 36 100.0 30 .................................... TTCTGACCGCTGGCTTCCTAACGCTTCATC 1370758 36 100.0 30 .................................... CCAACAACAACACCGACGACCCGCTACCAC 1370692 36 100.0 30 .................................... TTTCTCTTTTTCAGCGCAGTTTAATGGTTC 1370626 36 100.0 30 .................................... TATCGATGGCAACGCTGATTCCCTGTACAA 1370560 36 100.0 31 .................................... CCATTACAGACACAGGGCAAGGTGGGTACTA 1370493 36 100.0 30 .................................... ACCAATTAAACGTAATAAATTAGGTAGAAC 1370427 36 100.0 30 .................................... AGACTACAATATTGTCTTAATTGGCGATAC 1370361 36 100.0 30 .................................... GGCGTAGCAACACAATTCAAAGAGATTGAC 1370295 36 100.0 30 .................................... CATTACAACAAAGGGATAAGCCGCGCCTTC 1370229 36 100.0 30 .................................... TCAACGTGTTACGGTTCCTACTAACCCTTA 1370163 36 100.0 30 .................................... AATATAGCGTCTGAAGTCGGAATAAAACAA 1370097 36 100.0 30 .................................... CGAATCAAAGTCGAAAGAATACGATGCTAG 1370031 36 100.0 30 .................................... TAGTCGTTCAGCAATTACTAGGGTTAGAAA 1369965 36 100.0 31 .................................... AAAACGGTTCTGAATATGAGTATCTCGTTAA 1369898 36 100.0 30 .................................... GTATCTATGGGGTTTTGGGCTAGGTGAACA 1369832 36 100.0 30 .................................... TCTTGGAGTTCTCTTTGACCGCAAGGCGCT 1369766 36 100.0 30 .................................... GTATCTATGGGGTTTTGGGCTAGGTGAACA 1369700 36 100.0 30 .................................... GTATCTATGGGGTTTTGGGCTAGGTGAACA 1369634 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 1369568 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTTGGTTGACATCTCCTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAGGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGATCTTGCCTAATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCACATAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //