Array 1 5326-5779 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHMI01000055.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N51244 N51244_contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5326 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 5387 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 5448 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 5509 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5570 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5631 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5692 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5753 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47-684 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHMI01000021.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N51244 N51244_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 108 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 169 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 230 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 291 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 352 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 413 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 474 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 535 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 596 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 657 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGGGGATAAACCGCGTCAGCGCGGTATTGAGGCCGGGGACCGCCCG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16942-18605 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHMI01000021.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N51244 N51244_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 16942 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 17003 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 17064 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 17125 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 17192 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 17253 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 17314 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 17375 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 17436 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 17497 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 17558 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 17619 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 17680 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 17741 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 17802 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 17863 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 17924 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 17985 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 18046 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 18149 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 18210 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 18271 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 18332 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 18393 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 18454 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 18515 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 18576 29 96.6 0 A............................ | A [18602] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //