Array 1 496122-497144 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP053939.1 Neisseria mucosa strain FDAARGOS_758 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	=================================	====================================	==================
    496122	    33	  97.0	    33	G................................	CACCTTGACCGACTGAACCACTCGTTCCACCTT   	
    496188	    33	  97.0	    32	G................................	AAACGTCATCGTCATGTTGTTACGGTCGATGC    	
    496253	    33	 100.0	    32	.................................	AACTTGAGATGTAGAAATATTTTGACTATTCG    	
    496318	    33	  97.0	    32	A................................	CTTTCCCGCAATCTTTATTATCGTGTTTTATA    	
    496383	    33	  97.0	    32	G................................	TGCTGAGAATTTTCTTTTTTGAAATTCACAGG    	
    496448	    33	 100.0	    33	.................................	GTATCGTTTAGCCAATCAGAACCAATTTGCGAA   	
    496514	    33	  97.0	    33	A................................	TTTGCCAAATCTGAGACGGCCATTAGTGTCTTG   	
    496580	    33	 100.0	    33	.................................	ATAGAATTAACGGTTCGGAAAACCATCATTGCA   	
    496646	    33	  97.0	    32	G................................	ATGAAGCACAAATTGAAAGATTTTGAGTCATA    	
    496711	    33	  97.0	    35	T................................	ATCAGTATTAATGAAGTATTTGATTGAAAAGCAGA 	
    496779	    33	  97.0	    32	A................................	AGTCTATCGACAATCGCCTTACCGTTTACCAC    	
    496844	    33	 100.0	    36	.................................	GCTTATAATGTTGCGTAATGAGGCGGAGTTAATACG	
    496913	    33	 100.0	    34	.................................	GCAGTAATAGTAGTTGTAGCATCTGAAATGCCAT  	
    496980	    33	 100.0	    34	.................................	ATGCGGTAGGCAACAAGGGCTGGCATAAACAAGG  	
    497047	    33	 100.0	    32	.................................	TATGAAATTCATCACGAGAAATCATCAAATCA    	
    497112	    33	  93.9	     0	A............G...................	|                                   	
==========	======	======	======	=================================	====================================	==================
        16	    33	  98.1	    33	CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC	                                    	       

# Left flank :   TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAGGCAAGGTTGCGGCGCGTGGCGAAATTGTGTTTGGATTATGGTGTGCGTGTGCAGTATTCAGTATTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAAGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTAGGCAGCAAATGGCGACGTAAAGTAGAACACCACGGCGCGAAGCCGACGGTAGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATGGGGATTGTTCTTTAACAATCAGGATATTGTGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGAGTGCTTAGCGAGATTAGGTTTGCGAAACTTGATGTAGCAAGGCTTTTAAGAGAGGC
# Right flank :  CTCTGCCACCGTATCTTATGTCTGAGTAGGGAAGAGGGGCTGTATGTTCAAATATCGTCCAAGCAGGCCACTTTTCTTTTGATCCTTCGCTTTCTGAAGCTTTAGTGAAAGCAGTAGAGGATATTAGAAGTAAGTTATAAAGATTAATCAATAACAATGCCGTTTGAAAAAGTTTCAGACGGCATTTTTTCTATTTACATATTAAATTTAATATCATATTATCATTGAATCTGTATCAATTTGAATTTTTTAGAATTCCAATATGAGCCCCCTCATTTACTACGCCCATTCCGCCCAAGACAAACTCGGCAATCTCTTACATTACAAACATTGGCAAACCTTGCAAAGCCATTTGGTCAATGTTGGGGAAATAGCGGCGGAGTTTGCCCGGGTATTTGATGCACAGGAAATTGCTTGTCAGACGGGAAAGCTTCATGACTTAGGGAAATATCCAGTAGCCTTTAATCGCCGATTGCATGGTGGCCCTCAGTCAATCATGC

# Questionable array : NO	 Score: 5.85
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-5.90,-5.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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