Array 1 138556-138781 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024733.1 Prevotella intermedia strain KCOM 1741 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 138556 26 100.0 40 .......................... AGTTAAAAGCGAAGGGGGTGAACCGATGAAGTTGTTTTTA 138622 26 100.0 40 .......................... TTTCCTTCATGGGGAGTTTTGCAGTCGCAAGTTGTTTTTA AA [138630] 138690 26 100.0 40 .......................... TAGGTGATGCTTCAGGTGTTCCTAATAATAGTTGTTTTTA 138756 26 96.2 0 .......................C.. | ========== ====== ====== ====== ========================== ======================================== ================== 4 26 99.0 40 CCTTGCAAACAGCAGGCAGATGCAAC # Left flank : CGAGAAAGCATCTTATCTTGCTCTGTACAGCGGCTTTCATGTCGTCGTTGCACATCAACCGAAACCAACAGAACCGAACGAGCCACCGCATCGAGCCGATGCAAAAGCCCCAACCACCCTTGCCGATGTCGCACTATCGGCAAAGCCACCATTCTGCTGCCGCCCGAACCCACGCCACAACCTCTACACTTTCCACGACGTAAAACCACTCCGATTTTGTAAAGATAATTCCATAGAAAAAACATAATTTCGATTTTACATTCCAAAAGCGGCTCTTTTGCAACGCAAAAGAGCCGCTTTTACCGTGTAAAACCTACGCTTTCGCAATGCAAAACAATAGGTTTTACAATGCGCTGATAGAGAGATAGTTACGCAATAGTTTCGCTTGTGAAAATTATTTACACCTTTCTCGCCTTTTTTCACCCATAGAAAGGTGTGTTCCCCCTTCCATTTTTACTTCCCCCAATTCCATTCCCTTGCTTGTTAATAAGTTGTTTGTG # Right flank : CGCACCTAACCTAACTTTCTGATTCTTATATGTTTTGTTTCTTTCTTTTTACCACCCATTTTACGCATTCTAACTATCGAATTGTAAATCTCGTTGTTTTAAATTTATATCTTTTCTGATTTGTATTGAGAGGCTCTGATGAATTTCTATCATTCTCTTTGCAAGCTCTCGTTTATCTATCATTATCTTCTCATCGGGGTTGTTCTTTTTAGCAAGCAAAAGTTTATGAACAAGAGTTCTATATTTAAATATCAGCGACATAACCTCTTTTGATAGATAGATGCCATTGCCCTTGTTGTATATTTCTTCGGTTAGCTCTTTTATAAACTTACGTATATTGGCTTGTTTGAAATAATAAGTTTTCTCTCCGCCGCCCTTAGGCTGCTCCCACACCAATATGCAGTCGTCGTTTTCCGTATCTGTAATAAACCTAAGCAATTTATAAATGCTTTGGTGCGCCTTCAGTATGGCTTCATACTTTGCACGCTCAATATTCTCAA # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTGCAAACAGCAGGCAGATGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 1006927-1007506 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024732.1 Prevotella intermedia strain KCOM 1741 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1006927 46 95.7 30 .....A...-..................................... CCAACTCGCGGAAGTTATCATCGTTACCAA 1007003 47 100.0 29 ............................................... AACTAAGAAACTACATATACAATATGCTG 1007079 47 100.0 30 ............................................... GCCTGCATTTTACCGTATCTCAAGTTATAA 1007156 47 100.0 29 ............................................... AACTAAGAAACTACATATACAATATGCTG 1007232 47 100.0 30 ............................................... GCCTGCATTTTACCGTATCTCAAGTTATAA 1007309 47 100.0 29 ............................................... TTAGAGATATTAATAATAAGTTAAATAAA 1007385 47 100.0 29 ............................................... TTAGAGATATTAATAATAAGTTAAATAAA 1007461 45 89.4 0 ..................................--....T.C...A | C [1007500] ========== ====== ====== ====== =============================================== ============================== ================== 8 47 98.1 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGTAAATACAAC # Left flank : GTGTTTTATTTTCAGTGGTTGCATACCTTCATTTGTTAAAGTCTGAATATTCGTTAAAACGACTCCGAAACTGTTAAATTTCAAAGCCCCAACTTCCGAATTACGGGCACTTTTCTGCACTTCAAATTATTTATTTGCAAATAACGTCATTATTTGCGTGCTACCATAAGTGCTTCGTTCATAGCTTCTTGCAAGCTTATAGGGTAGTGTTATGCAATGAAACCATACCTTTTACGTCGCAAAACGAACACTTTTATTCGCATATAGGCTATATTTTTCATTCCATCATCATCTTTTCGCTCTGCAAAAGAGCCGTTCTTGCAATCCAAAAGAGCCGCTTTTGCGCGGTAAAACTTATTGTTTTGCATTGCAAAAGCGGCTCTTTTACTTTTCCACCCCTATTTTCCACCCCTCTTTTTCTCTATTTTCCCCTTTCCGCTTGTGTTAAATTTATTGCCCCATTTACTTGATTTTAGAACAATAAATCGGAAGTGTCGTTA # Right flank : ATCGAAGTGCAACAAACAGCCACGTTTTTCATGGTCTCTAATCTATGAAAAACACCGCAGGTTTGCCCCGCGGCTGGGGCGCGTAGCCCCGAAGAGCGATACCAGCAATACAAAAAAGGAGCCCCCTTTTTGTGGGCTCCCCAAGATTAATTATCTTTGTATTGTTATGTATAAACAATTAACCTCGGAGCAAAGGTCGCAAATTTTTGCCTTACTCCAAAGAAAAAGTCCGAGAAAAGAGATTGCGCATATTGTGGGCATCAGTCAATCCACGCTTTCCCGTGAGTTAAAACGCAACGGCAGTCCATCGGGTAAGTATGTCTGGTTCAAGGCACATGACAAGGCCATGGAACGTCGAAAGCGTTCTGTATCCAATGCTGCGCTTGCCCCTGGACTGGTATGGAGAATAAAACGAACCATCATCGAGGAGCAATGGTCTCCACGGCAAATATCAGGGGTTTTGAAAAAGGAAGGTGTCAGCGTGTCGCATCAAAGCATCT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGTAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.47%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 1008681-1012564 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024732.1 Prevotella intermedia strain KCOM 1741 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 1008681 47 100.0 29 ............................................... GCTGTAAGTCCCTTTAATTTGGGGTAGTT 1008757 47 100.0 30 ............................................... CAGAAGGAAGCACGCTCTCTACACTGGAGC 1008834 47 100.0 29 ............................................... GGTTGCGCCCGGAAAGCAATGGGTTGTAG 1008910 47 100.0 30 ............................................... CGTCTATAAGCTGCATATCTTCGATGCGGG 1008987 47 100.0 30 ............................................... ACAAAAATATCCGTTCGGATAAATGGCGGT 1009064 47 100.0 29 ............................................... TTTTTGATTTTAATAGTAGTACTACCAGA 1009140 47 100.0 30 ............................................... ATAAAGCGAGTTATACGTCCTAAAGTGTCC 1009217 47 100.0 30 ............................................... CAACACATTCCTTAAAATTAGAATGAAGCT 1009294 47 100.0 29 ............................................... CGTTGAATAAACGGTAAACATTAAAGTCA 1009370 47 100.0 30 ............................................... TGTACTTAACGTTATAAGCGCCTCTACCAA 1009447 47 100.0 30 ............................................... ACTGCCTCGTACACGTTTGTTGGCGTGTAG 1009524 47 100.0 30 ............................................... AAATATACGTGTTAGTAGCTGTATAATAAG 1009601 47 100.0 30 ............................................... CAATAGGCGAAAAATTCCTTTATGAGATTA 1009678 47 100.0 29 ............................................... AAGCTGGATATTAGCAACAGCAGCAGTGG 1009754 47 100.0 30 ............................................... GGAAGTAGCAAACGCAATAGTAGCAGCAGC 1009831 47 100.0 30 ............................................... TACAACGCATCATTGACACTAAGCGATACA 1009908 47 100.0 30 ............................................... GTAAACTCTTTTCGTGTGCGTGCTGCCGAC 1009985 47 100.0 29 ............................................... CTTAGAATATGCCGATAATGGCGTCGTTA 1010061 47 100.0 29 ............................................... CAAGTATAAGCGTTTCCTTTTTTGGCGAA 1010137 47 100.0 29 ............................................... CAAATTCAACGTGTATGTGGTCTTTTTCA 1010213 47 100.0 29 ............................................... TATAAGTATTTTATTTGTATGGAGTATGG 1010289 47 100.0 29 ............................................... TTGTATGATAGAATTCTAAAGGCAGACGA 1010365 47 100.0 30 ............................................... TTTTGCATACCTGCTTTTTCCATTCCTGGA 1010442 47 100.0 30 ............................................... CCTAACTGTGGGTACTTCGACAAGAAACGC 1010519 47 100.0 30 ............................................... TAACGGGGCAAAAATCCAAAAGATTTACCA 1010596 47 100.0 31 ............................................... CTTCGAGGGCAACGCCTGCTTTAAGCAGTGA 1010674 47 100.0 29 ............................................... CTTACGTTGTATGAAGCGTTCCAAATGGA 1010750 47 100.0 30 ............................................... TTCATATCCTTTGACCAAATCTTTCTACAC 1010827 47 100.0 30 ............................................... CATAGCGTCAAAATCCGCATTCGGGAAGTC 1010904 47 100.0 30 ............................................... GCGCTCTCGTTTTCAATTTATTCTTCCACT 1010981 47 100.0 29 ............................................... AGATGATAACGCTAAGAGATAACCAACAA 1011057 47 100.0 30 ............................................... ATATGCGTCATTATTCAGAAGAAACCATTA 1011134 47 100.0 29 ............................................... GGGTATCATTCGATGCATCGCCGTGCGAC 1011210 47 100.0 30 ............................................... TCTGTTACCTATAAGGGAATTCTTGTTTAG 1011287 47 100.0 30 ............................................... ACCCTTTGTTTACGTATTTGTTCGTCTAAC 1011364 47 100.0 29 ............................................... CGAAAGTAGGATTAGGCATAACTGCGTTG 1011440 47 100.0 30 ............................................... CGGTGTACATAAAATTCTTACTTAACATAG 1011517 47 100.0 30 ............................................... GCTTGTATCATAGAGCTAACACCGCCTAAC 1011594 47 100.0 30 ............................................... AAGCTGCATATCTTCAATACGAGCTTTCCA 1011671 47 100.0 30 ............................................... TATTATTTATTTGTTTACAATGCAAAGATA 1011748 47 100.0 30 ............................................... CAACGCACTCCTTGAAATTAGAATGAAGCT 1011825 47 100.0 30 ............................................... CGGTGTACATAAAATTCTTACTTAACATAA 1011902 47 100.0 30 ............................................... CTACATACTGCCGATATTGCGAAGCATTAG 1011979 47 100.0 29 ............................................... TTTCTCAACTCTAATTGTTTTACTCTCAT 1012055 47 100.0 31 ............................................... TGCAGGGGGGCTTGTGGCTTATGGAGACGGC 1012133 47 100.0 30 ............................................... ATTAGAGCTGCAAAAAAAAATAGAAATTAT 1012210 47 100.0 30 ............................................... GTTTCTCAACTCTAATTGTTTTACTCTCAT 1012287 47 100.0 30 ............................................... GTTTGACAACGCCGAAGCAAAGGAATACCA 1012364 47 100.0 30 ............................................... GCGTTCTTTTGGAACTCTGCCGTTAATATC 1012441 47 100.0 30 ............................................... CTAACGGCAAGCATAGCTCAAATTACAAGA 1012518 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 51 47 100.0 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGTAAATACAAC # Left flank : AGTAGACCGCTACAACCATGCTATCCTCACCATCGTGGAGCGTTCCACCAACATGCTCTTCATGACGAGGCTGCCACATGGGAAAAAGTCCGAGCCATTGGCCAGAGAGGTACGCAGGCTGCTGCTACCCTACAGGAAACATATAAAGACCATCACTACAGACAATGGTCCTGAATTTGCAGCGCATAAGATGATTACTGAATACTTGGGAACCATCGTTTACTTTGCCGACCCATATGCCTCATGGCAGAAAGGAACCATTGAAAATACAAACAAACTCATCAGGCAATACATACCAAAGCAGGCAAACTTCGATGATTTCACAGACAAAAAGATCGCGAACATACAGAAGAAAATAAACAGAAGACCAAGACAAAAACTAAATTTTAAAACGCCAAAATGCGAGTTCTACAGAAAAATATAATAATTTTGCACTTGCTGGTTGACTCTACGGCATTAGTAAATACAACCTGCACCAAGTCTTTTGCGGTTACAATTCT # Right flank : CTCAAATGGATTAAAGTGATGAACATCAGTGTTGTTACGAAAGATTAGAGAGAAAGAAAAATGCAAGCAAAATAAAGTTCCACTCGTTAAGAATGGAACTTTATTGTTTCTAAAAGAAGGATTAAAAGAGCTCTAATTGTGCTCCAGGTGCATTTGGTTTTTGTGGTTTCTTACCATAGAATAGCTTTATTTCTTCAAATTGTTTGTCTGTAATGCCCATTATTCCAACTTTTCCGTATGCTGGAATAAAGGTGGAAACTCTTTTGATGTGTACTTCCATATTTTCTTTACTACCACAGTGGCGTATATAAATGGAGAACTGAAACATTGTAAATCCATCTTTCAGCAAGTTTTGACGAAAGAGTGAAGCTGCTTTTCGTTCTTTCTTTGTATCTGTGGGTAAATCAAAAAATACCATTAACCACATACTTCTGTATTGACTAAATCTATAAGTTTCCACTAATAGGCTTTATAATTCTGGATAAACCAATCTTCTTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGTAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.47%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //