Array 1 95692-97061 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRXQ01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain GR890 NODE_4_length_275271_cov_161.426621, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95692 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 95753 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 95814 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 95875 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 95936 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 95997 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 96058 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 96119 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 96180 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 96241 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 96302 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 96363 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 96424 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 96485 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 96546 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 96607 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 96668 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 96729 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 96790 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 96851 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 96912 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 96973 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 97034 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113194-114365 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRXQ01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain GR890 NODE_4_length_275271_cov_161.426621, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 113194 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 113255 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 113317 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 113378 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 113439 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 113500 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 113561 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 113622 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 113684 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 113787 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 113848 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 113909 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 113970 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 114031 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 114092 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 114153 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 114214 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 114275 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 114336 29 96.6 0 A............................ | A [114362] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //