Array 1 470854-472894 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUV01000001.1 Salmonella enterica strain BCW_3057 NODE_1_length_652921_cov_4.38522, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 470854 29 100.0 32 ............................. ACTATCTCAAAACCGAAAACGACGGGATGGAA 470915 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 470976 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 471037 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 471098 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 471159 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 471220 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 471281 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 471342 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 471403 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 471464 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 471525 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 471586 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 471647 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 471708 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 471769 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 471830 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 471891 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 471952 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 472013 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 472074 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 472135 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 472196 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 472257 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 472318 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 472379 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 472440 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 472501 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 472562 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 472623 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 472684 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 472745 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 472806 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 472867 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 489153-490994 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUV01000001.1 Salmonella enterica strain BCW_3057 NODE_1_length_652921_cov_4.38522, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 489153 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 489214 29 100.0 33 ............................. GGTGCTGACACCTCCAGTGTTTATGCGTTGCGG 489276 29 100.0 32 ............................. ACTTACGACCATTTAGACAAGGCGCAAAATTT 489337 29 100.0 32 ............................. CGACCGGACTCAACCGTATTAAAGCGCATATA 489398 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 489459 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 489520 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 489581 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 489642 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 489703 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 489764 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 489825 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 489886 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 489947 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 490008 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 490069 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 490130 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 490191 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 490252 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 490313 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 490416 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 490477 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 490538 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 490599 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 490660 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 490721 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 490782 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 490843 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 490904 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 490965 29 96.6 0 A............................ | A [490991] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //