Array 1 164144-162246 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTU01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain inss37 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 164143 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 164082 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 164021 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 163960 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 163898 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 163837 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 163776 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 163715 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 163654 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 163593 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 163532 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 163471 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 163410 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 163349 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 163288 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 163227 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 163166 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 163105 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 163044 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 162983 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 162925 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 162864 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 162803 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 162742 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 162681 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 162620 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 162559 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 162498 29 100.0 11 ............................. CGGCCAGCCAT Deletion [162459] 162458 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 162397 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 162336 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162275 29 93.1 0 A...........T................ | A [162248] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182042-180426 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTU01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain inss37 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182041 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 181979 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 181918 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 181857 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 181796 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 181735 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 181674 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 181613 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 181552 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 181491 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 181430 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 181369 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 181308 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 181247 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 181186 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 181125 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 181064 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 181003 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 180941 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 180880 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 180819 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 180758 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 180697 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 180636 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 180575 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 180514 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 180453 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //