Array 1 212176-209967 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSI01000014.1 Salmonella enterica strain CVM 43817 43817_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 212175 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 212114 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 212053 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 211992 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 211931 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 211870 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 211809 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 211748 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 211687 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 211626 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 211565 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 211504 29 100.0 32 ............................. GCCCCTTATTACTCCGAAAATCCCAAAGATCA 211443 29 100.0 32 ............................. AAAAATCGGCTAACGAGGAAACGGCCTATAAC 211382 29 100.0 33 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTGC 211320 29 100.0 32 ............................. CCGTCGGTGTTGATTTTCAGCTCTTTAGCTTT 211259 29 100.0 32 ............................. GAAATATTTGCATGGATAGTTGCGCTTTATAT 211198 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 211136 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 211075 29 100.0 32 ............................. TGATATCCCTCTGGTGATAGGCGTTGAGGTAG 211014 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 210953 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 210892 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 210831 29 100.0 33 ............................. ATTTAAACCACATTGAAACGGCTATTTACTGGC 210769 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 210667 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 210606 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 210545 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 210484 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 210423 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 210362 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 210301 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 210240 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 210179 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 210118 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 210057 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 209996 29 96.6 0 ............T................ | A [209969] ========== ====== ====== ====== ============================= ========================================================================= ================== 36 29 99.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 230174-228437 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSI01000014.1 Salmonella enterica strain CVM 43817 43817_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 230173 29 100.0 32 ............................. GCGTGCAGCGTGTTTTAAAGGGGGTTTAATAG 230112 29 100.0 32 ............................. CCATCGCAGAAAACAAACCGGGTTTTATTGCG 230051 29 100.0 32 ............................. CCCGCCCGCACAGGGAGGCGGTAACAGCTCAA 229990 29 100.0 32 ............................. GAAACCGCCCGATTCAAAAAAACGGCCTTCTT 229929 29 100.0 32 ............................. GGCACGCTCAAACAAATTTTTGTTGGTTTCTC 229868 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 229807 29 100.0 32 ............................. GCCAGCCCAACACCAGCAATAGCAGCAGCTAC 229746 29 100.0 32 ............................. ATGAGGCCGCGATGCGCGGCTGGTCAGGTGAG 229685 29 100.0 32 ............................. TAGGTTTCTTCCTGAAGGCGAAGCATTTTCTT 229624 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 229563 29 100.0 32 ............................. CGGCGGGCTCGCTATCAGCCTTGCGGCGTTCC 229502 29 100.0 32 ............................. TTATTATAAGCGCACTCAGGCCGGAAAAGTTA 229441 29 100.0 32 ............................. GCTATTTAGCACCTTGCGGTGTTCTGCTATGC 229380 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 229319 29 100.0 32 ............................. AATTCCTCGATAGCGATCTGCACCAGGTTGAA 229258 29 100.0 32 ............................. TCTCAATGGGAAAAATCAAGTCAGATGCTTCA 229197 29 100.0 32 ............................. CGACGGTGGCTGAGTTAAAACAGGCCTGGAAA 229136 29 100.0 32 ............................. ATCGACGCTGGTCTGGTGTGGCGCGACGGACG 229075 29 100.0 32 ............................. AACGCTTTTATTTTTTATGACCCCCCAATTTG 229014 29 100.0 32 ............................. ACCGAGGTCGATCTGCTGTCTGACGTGCAGCA 228953 29 100.0 33 ............................. CACCCCATCATCTTCCGCAATCCACATTCCAGC 228891 29 100.0 32 ............................. ATTGAACCCGCCTACGCGCGGGTATTTTTTTC 228830 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 228769 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 228708 29 100.0 32 ............................. CGTTCGAACGCTACACCCTGGCAAGGGCAACT 228647 29 100.0 32 ............................. TCGCCCTTTCGTTTCGTGGGAATGTTCAACGC 228586 29 100.0 32 ............................. GTCTGCATCGCGTACAATGCGCCCGCATCGCC 228525 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 228464 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCAATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //