Array 1 1915-2403 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVWM01000851.1 Chroococcidiopsis cubana CCALA 043 NODE_1613_length_2447_cov_3.47342_ID_95320, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 1915 36 100.0 46 .................................... TTAGAAGTTTCTTGTTGTAAAAATTTGGAGAAAGGAATATGGTCTA 1997 36 100.0 38 .................................... TAGTTTTTGAGATAGATGCTCTAACACATCTACTCTAC 2071 36 100.0 37 .................................... CATCTATGGTTGCGACGACTCTTCGTCATTTTCCTGA 2144 36 100.0 37 .................................... TTCTCAACGTATACTACTGCTGCAACCTCAATGTCCA 2217 36 100.0 39 .................................... ATGGCTACTAAAGCAATTTAAGGAAGCATCGTCTTCCTA 2292 36 100.0 40 .................................... CTGTTTGCTTCCATCCCAGTTGGAAATTTCCCTTGGTTGA 2368 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 7 36 100.0 40 GTTTCCATTCAATTAATTTCCCCAGCGAGTGGGGAG # Left flank : TTTTCAAAAATAACAATTAGCTTAGATTTTGCAACTTTTGTCAGTTGTACAGCCTGGTTTGGGTAAAGAAAGCTTACGACCTTCGCATCCAGCGTTGAGATAGTGTCTAGCTTTTTCCTCAAACTCTGCAAAACTTTGTCCTGGCGACACAATCTCGATTGCCAAGGTGCAGGGAACGGGACAGGCTTCGTTGCGTTTCCACTGTTTGGGTAGGCGATCGTCAGAGACATAAGTTAGAGCAGGAGTAGGAACTCAGTCTTTGCCATTGCGCTGTAAGACTACTGCCCATTCTGGTGAAGTCCGACCCTTGCCTTGACAACAAATTTCTATCAGCCTCAACAGAGTTTTCTACAACGAGGAATGAAAATATTTTGGGGACACTTTGGGTATTGCCTTACCATCTACTAATTCAAATGCTGTCTTCCCTTCGGGTAGTAACTAGAATTCCTCTAGAGTTAGGTTTTATAACTGGGTAACGTTCATCTCTCCTTTCCTATATT # Right flank : TCAAGTAGTTAAGTAGTTAACTACTTTCATAGTGGGGTTTCCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATTTCCCCAGCGAGTGGGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 79-1292 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVWM01000335.1 Chroococcidiopsis cubana CCALA 043 NODE_465_length_8122_cov_4.66613_ID_55060, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 79 36 100.0 36 .................................... GAAGCTAGTTGCCGCTCTTGCCGCGCGAAATTAGGA 151 36 100.0 37 .................................... GAGAAAACAGATAACGATTTTATTTGTGACGCGATCG 224 36 100.0 36 .................................... CCTATTCAGGGGAATTAAAGATAGCTTTATATTCTT 296 36 100.0 35 .................................... CAGACGTTAACGATTGGCAATTTAAAGCAACTGAA 367 36 100.0 36 .................................... ATTTCTGAACGACACTGCCTTCGCGAGTACCAGGCA 439 36 100.0 42 .................................... ATAGATACTGTTGCGTTCATCCTATTTACTCCTTCTTAGTTA 517 36 100.0 39 .................................... CTTGCTCTAGTTAATGGCATAATTACTGTAACTCCGTAG 592 36 100.0 39 .................................... TTTGAATGGAATTTGTTTGACGAGATATAAATATGGGAA 667 36 100.0 37 .................................... TTAGGTGCAGCAACGCTTGGAACTACCCTACTTTTAA 740 36 100.0 38 .................................... TGTAAAAACTAGTGAGAAAAAATCAACTGCTAAAAAAT 814 36 100.0 39 .................................... AAGAGTCGCTATCAGCTTGGGCTCTTGCTATTTTTTTAT 889 36 100.0 39 .................................... TTTAGAATCTCCTAATCCTAGCCCTGGCGACATCATTAT 964 36 100.0 37 .................................... GAGAATAGTTAGTTCAGGAGTCATGCCGACTTCTTTT 1037 36 100.0 38 .................................... CTGAATGGGTTACGGCGCTGGTACGCGCAAATTATCTG 1111 36 100.0 38 .................................... ACAAAAGCGTCAACTAAATCTCTATTATTGGCTTTTAT 1185 36 100.0 36 .................................... CCATCATAAAAACAGGGCTGACTTTTCTGCTTTTTC 1257 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 17 36 100.0 38 GTTTCCATTCAATTAATTTCCCCAGCGAGTGGGGAG # Left flank : CCCCACTCGCTGGGGAAATTAATTGAATGGAAACCCCACTATGAAAGTAGTTAAGTAGTTAACTACTTTCATAGTGGGG # Right flank : GTCCTTCAATTTAAACCCATATACTGCATAGTGTCCAGAGACGAGTTGCGAAGATTCTAGTTTCTGGGGCTAAGAATAGGGGAAATGGAGAGTTAAAAATTGCTGAAGCCCTTTCACGATAAGGAATCGAGGCTAAGAACGTGTTGACTAGCTTTTCAGCCATTTCTTGTAACCTTCGCAAGTCAAATTTAAATAACAACTGACCCAGGTAATTTCGTTAATGGCAATCCGCCCCAAGTATCTACTTGAGCTAACGTATGTTTTGAGATCGGATAAAAACGTATACTATCTTCCGCTAATTTGACTCTTTTTCTTAGCCTTTGACGTAATTCGTCATACTTAGTTTGAGTTAGTATACACTCAAATACACTGTACTGTACTCTCTTGCCATATCCTTCTAGTAAGTCCGATACTTTTTTACGTCTTCTATCATCAGGGATATCATATACTACTACATAAAATAGCACGATCTAGCGAATTTGATAAGGTTGATAAAGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATTTCCCCAGCGAGTGGGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 5251-6922 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVWM01000400.1 Chroococcidiopsis cubana CCALA 043 NODE_547_length_6945_cov_5.0514_ID_58403, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 5251 37 100.0 37 ..................................... AAATTGCCTTTGACTACAGCAGAACTAAAGCCTTGAA 5325 37 100.0 43 ..................................... TGCTCAGGAACTATCGAATACAGCACTGCCAGCGATCTTCAAG 5405 37 100.0 35 ..................................... GCGAACTTCGCCATTTCCTACAGCACGGCGCAGCG 5477 37 100.0 35 ..................................... AATAGTGATGTGATAATGACTCTCACGATCGCATT 5549 37 100.0 34 ..................................... CGGCTATGGGCGGCGGATTGCCAGCCGTATCGGG 5620 37 100.0 40 ..................................... TTGTATGCGGCGTACCCAGCAACGCTAGCAGCGATGCCAG 5697 37 100.0 34 ..................................... AATCCTCGACAATTGATTTCTATTCCTCCCGCGT 5768 37 100.0 39 ..................................... GAGAATGACTAAATACTACCGCTTAGAAAACAAACTTCC 5844 37 100.0 35 ..................................... CTAATACCGATCATTCCCAGGTATACTCCGTTGAG 5916 37 100.0 39 ..................................... AATGTGCAGTGTGGTATCTCTACCACACTATTACTATAC 5992 37 100.0 35 ..................................... ATTCTGGCTTAGTTCCAAGCGATCCGCTCCACGAC 6064 37 100.0 34 ..................................... AGTTGATGAATTAACAGAGGCACCATCTAACTTT 6135 37 100.0 45 ..................................... AATACCTCCAATTAGCCTTAATGACGCTTCCAGCGCCCTCTAATT 6217 37 100.0 41 ..................................... TCAGTACGACTGTACTGCTGATAGCCCAGAAGCAAACCCAG 6295 37 100.0 36 ..................................... TGATATCAAACCAGCGTTTACACCAACTCCCCTAGT 6368 37 100.0 34 ..................................... ATCAACTCTAAACTAGGGGCGCAAATTCCCAACG 6439 37 100.0 39 ..................................... TCAGTGGCAACAGTGCTCAAACATGCTCCAAATCCTGTA 6515 37 100.0 36 ..................................... TTACCTGTGATTGACTCATCACATATTCCCCATCAG 6588 37 100.0 35 ..................................... AGTCGATTTTGTGAGGGAAGCAGTTAAAGAGAAGG 6660 37 100.0 36 ..................................... AGCGCCGCTCCACTTTCAAAATTATCGATAAGTTAC 6733 37 100.0 38 ..................................... ATTTAATAAATAGCAACATCACCGATGTTTCTATAAAA 6808 37 100.0 41 ..................................... TTAACTGATGGAAGCGACAACGAGAAAAGTCAAGGTAAAAG 6886 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 23 37 100.0 37 GTTGAAATTTAATTAACGCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTATTTCTTACGATATCTCCGAAGATAAGCGCCGTACCAAAATCCATAACGTTCTTAAGTCTTACGGGCAATGGGTGCAGTACAGCGTGTTTGAATGCCAGTTGAGCAATACTCAATATGCTAAATTACGTTGGCGTTTAAATAAGTTAATTAAGCCGGATACTGATAGTATTCGATTTTATTTTCTATGCGCCTGCTGTTTTGGTAAAGTTGAGCGTATTGGTGGTGAACCAGTTTATGATGACACTATTTTCTTTGCTGAATGCGCGGATGGGTAGGTGTTGGTACAGAGAGTTTGAAAAAAATGCTGGTGATCGGCGCGATACAGTAGTTTACAGGAATAATGGTTAATAATCTACCGCGCTCCTTGCTAAGTCTATGTTTTCACAATTTGTACCTTGCATGAACCAGCTTTTGTGATGCTATTATTGCTTTATCCGCGCTCTCGAACCTTGAAAACTAAATATGGCTTAGTTTTCAGGCTCCCGCC # Right flank : TGCCACTCTCGATTAAGGATATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTAATTAACGCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA //