Array 1 123227-127308 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCYF01000090.1 Bifidobacterium longum subsp. infantis strain IN-07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 123227 33 100.0 35 ................................. CTTTCTTGGGTCGTCATTTGACCCCGTATCGGCGG 123295 33 100.0 34 ................................. AACTTCAACAAAGCAAACAGGAAGCACTACCGTA 123362 33 100.0 34 ................................. CATTTCACGTGGTAGAACAGGAACGCGGTCAGAC 123429 33 100.0 35 ................................. TCTGCGCGCTCGTGCTGACCATTTAAGGCTTGCCC 123497 33 100.0 36 ................................. GCATTAGAAGGAGACTTATTTTGACTCAGATCCCAG 123566 33 100.0 35 ................................. CATTGGTCAGATTGCCGTTTATGCGGATTGTCTGC 123634 33 100.0 33 ................................. CGCAAACGCGGGGTGAAACGCGAAGGCAGGAAA 123700 33 100.0 36 ................................. CGAACAAGCCAGGGGTGAAATATTGGGTCAGCGCCT 123769 33 100.0 35 ................................. TCAAGCTTCGCCAACTCGTATCGGACGGCCTCCGA 123837 33 100.0 35 ................................. TCCGCGTCTATCTTGCGGTGGAAGCCCCTCTTGTC 123905 33 100.0 36 ................................. TTGACCTGGCTGAGGCCGACCGCAGGGCTTTCGTGG 123974 33 100.0 33 ................................. GCCAGCCAACCTCATCCATTTATGCGGCTCCGG 124040 33 100.0 34 ................................. TACACGACCAAGGATGCGGCAGACCAACTCTACG 124107 33 100.0 33 ................................. AACGACCACCCCGAAAACACACCCGTATGGGAC 124173 33 100.0 35 ................................. TCAAATACTGCGCGGCTCTGGGTCTGACCCCCGAA 124241 33 100.0 35 ................................. AGTACGTTGGCTTTCATGCTGTCCGTGAAGCCGGG 124309 33 100.0 33 ................................. CCGCAATCATCATGAAAAACAAAATCAACGCAA 124375 33 100.0 34 ................................. AGACTCCGGTTCACCCCTCCTGCCGGCACCGCTT 124442 33 100.0 33 ................................. GCACTCACTCAGGAAGCGGCGTACCCAATCCCA 124508 33 100.0 35 ................................. ATCCACAACCGTTACACGCCGTTGGTGGCGCGTGA 124576 33 100.0 34 ................................. CAGCGTATCGCTTTGCGCAGTATCGCGCGTAATA 124643 33 100.0 35 ................................. TGCCAGTCCGCGGACACCACGCACACCACCGTCAG 124711 33 100.0 33 ................................. AGAGAGGGGGTGATGTCATGACGTCCATCACCC 124777 33 100.0 34 ................................. CGTTTTTTATACCCTCGTTGCCGGCAACGATGGC 124844 33 100.0 34 ................................. ACGTACTGGAAACTGCATGAACTGTACGTACGGT 124911 33 100.0 35 ................................. CCGCTCCCATACGACAGGCCCAACCCCGCATCCCA 124979 33 100.0 37 ................................. ACGGTGACTTTCGCGCTTCCGGCGGTATTGCCGGTGA 125049 33 100.0 36 ................................. CTTGTTGAAGTTCCTCGAACGCGCCTGCACGAGGCC 125118 33 100.0 35 ................................. ATATACTGGTTAATGCGCAGCGATTGCCGCATTTC 125186 33 100.0 36 ................................. CAGACCCACCGTGATTGGTGGGTCACTTTATAAACA 125255 33 100.0 35 ................................. TTTCCTGGATTTGGGTATCCAACTGGGTGAGTATT 125323 33 100.0 36 ................................. CGGGATGGTAACCGGATAGTAGTGATCAAACGTCAG 125392 33 100.0 34 ................................. TTTTCGGGGATGAACCTGCCGTAGGGGAATTGCG 125459 33 100.0 34 ................................. ATCACGGCGCTCGCCGGCCGCGCCGACCTGGGAG 125526 33 97.0 35 ..A.............................. CGTAACCACCAGATCGTGTTCGACCAGTTCGCGGG 125594 33 100.0 34 ................................. CAACCTGACCGGAGCGGAATCCACCCAGGTGGCC 125661 33 100.0 34 ................................. ATCCTGCCCGACATCGAGGGCGGAGCCGCGCATG 125728 33 100.0 35 ................................. CAACCCCGGCAAACGGGTCATGGACAGCAGCTACG 125796 33 100.0 34 ................................. CAGCGGGCCATCACCGCCGCACCACTACTCAAGG 125863 33 100.0 33 ................................. TTTTTATAAGGCGCAATGCGCCGAAAAAGAAAA 125929 33 100.0 35 ................................. ATCACGGACGGGCCTGATGCGGATACTTTGATGCA 125997 33 100.0 34 ................................. CGATACCGGCCAAGGTCACGCAGATCACCGGCAT 126064 33 100.0 33 ................................. TTTTCGGTCGTGGAATTGTCGATGCCCAGATAG 126130 33 100.0 34 ................................. CACTTGCCGAGCTCGGTGGGGTGGATGTCGCATG 126197 33 100.0 33 ................................. AATCATGGCGCGCACAGGCATTGATCATCCACC 126263 33 97.0 35 ....................T............ GCCCATACGGTCACGCCGCGTTCGAACATGCCCTT 126331 33 100.0 34 ................................. TCATACCGTGATACGCTGACCGTATTATATTATG 126398 33 100.0 34 ................................. CACTTGCATTGCGCCGAAATTGCTGAGGCTGGTT 126465 33 100.0 34 ................................. CACGTAGGGGTTCGCGTCATCAATCATCATTATC 126532 33 100.0 34 ................................. CGCGATATAGTTGGACATGCCGCCCTCGCCGTCA 126599 33 100.0 36 ................................. GTGAACTGGATGGCGTCGGATTGGACGCCGTCGCAC 126668 33 100.0 35 ................................. GCGTTGTCCAACGTCTGCGCGGCACCGACCACGAG 126736 33 100.0 36 ................................. AAGCACGGGCGCGACGGTCACGACGCCTACATCGCG 126805 33 100.0 35 ................................. GTCGGCTGTCAGATACACGTGTCGTCTGCGCTGTT 126873 33 100.0 34 ................................. GCCGACTGCACCATGGCAAAATACGGACTACCCG 126940 33 97.0 33 ......A.......................... TGTTTTGGACCGGTGAGGGCTCTCGTGACTCGG 127006 33 100.0 36 ................................. ATGAATGAGTGCGAACGGCTTTCGGGCGGCGTGCGC 127075 33 100.0 34 ................................. GACATCGCATGGTCGGTCGCCGACACCACCGGAG 127142 33 100.0 34 ................................. GCGAAAACACGGACCTTGGGAGAGCGGGCATCGA 127209 33 100.0 34 ................................. TCGTATGATCAGGTCGGCGGAGGGGATTTGCTCG 127276 33 97.0 0 ...............A................. | ========== ====== ====== ====== ================================= ===================================== ================== 61 33 99.8 34 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : GCGGAACGTGGCCAAGATTTGCATGAGATACGGTCAACGCGTGCAGAACAGCGTCTTCGAGTGCTCCGTATCGCCGTCCGATTACCTGATTCTGAAGCATGATTTGGCGGCGGTTATGGATGAGTCGCAAGATAGTCTTCGATACTACAACCTCGGGGCGAAGTATTCCTCGAAGATCGAATATCGAGGAAGGCAGCGACACATGCCTGTTGATGGCGTGATGATGCTTTGATGCCGGATTGGTGTGTGGCGTGTGGATGTTGGTCGGTGCGAGCTCCAAGCTCTCATGAAGTACCGGGCTGTTCGCACCACGGTTGAGGACTTTTGAAGACGGTGTATGTTCTTCTTGCTGTTTGATAACTAAAGAGTGGATGATTTGCTGGTATTTCGATTCGGCAGATTTGCGTATCTGGGGGAGATGCGAGTGGGTTGTACAGTACAATCGATGCTAAGGAGTGGTCGGAGTGTCCGTATCTTGGGATGCGAAGTCCATTCCCGCG # Right flank : TAAAGCTCATCGGCTTCTTGGTAGTTGCCTTGATTGCTGTCGGTTTGGTGTTCAATGCTGGCGGTGTGAAAGATGTACTGTTAGAACCGTTCAACAAGATTATCGGTGCATAAATTTTTATTGTGGTGCTAATATGCGAATGTTATAATATGGATATATAAAATTTTGATTTATGGAGGGTATTCTTTTGAAGAAAGCAATGATATATGTTCATGGTAAAGGTGGAAGTTATCTTGAAGCCGAACAGTTCAAAAATATTTGTTTAGATTTTGATGTTTTTGGAGTAGATTATAATGACTATCTCCCGTGGATTGTAGAAGATGAAATTATGGAAGTCTACGATAGGATATCTGAAAAATATGACTATATATATGTACTTGCTAATAGTATCGGAGCTTATTTTACAATGCACATATTACAGAATTTCAAGATTGAAAAAGCATTATTCATATCGCCTATACTTGATATGGAACAACTTATAGTAGATATGATGAGCTGGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 128683-128848 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCYF01000090.1 Bifidobacterium longum subsp. infantis strain IN-07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 128683 33 100.0 34 ................................. GATGAGTTGCGTGAGCAGCACAATGACGATGGCT 128750 33 97.0 34 ............G.................... CCCCGGACTTTTTCCACACTTGGCAAGGAGCCGT 128817 32 87.9 0 .........TA.-T................... | ========== ====== ====== ====== ================================= ================================== ================== 3 33 95.0 34 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : CTAACAGTACATCTTTCACACCGCCAGCATTGAACACCAAATCGACAGCAATCAAGTCGTACCCCTCGCGGGGTGCGTGGATTGAAATTCCACGTCATCGAGTTCGAACGCGAAGTACTTGGTCGCACTCCTCGCGGGGTGCGTGGATTGAAATTTACTACGATATGGCGCGCCGTGGGCTGAACGGTGCCGCCGGTGACGGACTCCAGGCTTTCCTGGACGAGGATAAGGAGGATTGATATGGGTTTGAGGTCGATGCGTGAGAGCGTTGGATTGTCGCAGCAGGATCTATGCCGAGCGATTGGGAGCAGTACCGTGGGGCGCGTGTGGGCGTGGGAGGCGTGGTCCGACAGTCCGCGTCCGAAGTCGGCGCGTGATCCGCATCTGATGGGGTTTGCCACGGCCAAGGTGCTGGCGGACGAATTAGGTGTGACGTTGGATGATCTCTGGGCCGGGCTGAGTGGATGACGCGACACGCCCGACTTGATTATTACTACCAC # Right flank : TAAGCGCATGTACAAGGCCGCGAAATCACGAGCTGGCACTTCGGAAACTAATGCCGTAATGAAGACCATGAACCACATGTTTCCCGACGAGCTCACCTTTGGAGTGTTCGAATTATCGGTCGAATGGCCCGCCGAGGTCATCCAGCCACGGGCGAAAACATGGGATCATGTCTTCGATAACCACGGTCCCGACACGACAGTACTCGGGAAAACTCATTTTCCGAAGGAATGGGACGAGAAAAAATCAAGTGGGCTGTAGAAGAGACCGTCGTGGCTCCCGACCTCGTCATACCGGGTGGCAGGGAACGTCAAACCCTGTATAAGATAGTTGAAGACGAGATCATCCGCGTGTGGCTCCAGAAACACCGGCGGTCGATTCACCGTCCACACGGCACACCCGGTCGTGCCTCAGCAAAAGGAGAAGCTATGGCAACAGATTCGCAATGCGAAGCCGCATACCGGTGGCTGAGGCCATACTGCGACGTCCTTGAGGAAGCCGA # Questionable array : NO Score: 8.42 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //