Array 1 65065-63411 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLFW01000022.1 Salmonella enterica subsp. enterica serovar Infantis strain 16-SA00749 NODE_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65064 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 65003 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 64942 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 64881 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 64819 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 64758 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 64697 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 64636 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 64575 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 64514 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 64453 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 64392 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 64331 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 64270 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 64209 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 64148 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 64090 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 64029 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 63968 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 63907 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 63846 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 63785 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 63724 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 63663 29 100.0 11 ............................. CGGCCAGCCAT Deletion [63624] 63623 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 63562 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 63501 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63440 29 93.1 0 A...........T................ | A [63413] ========== ====== ====== ====== ============================= ================================= ================== 28 29 97.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82841-81347 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLFW01000022.1 Salmonella enterica subsp. enterica serovar Infantis strain 16-SA00749 NODE_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 82840 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 82778 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 82717 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 82656 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 82595 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 82534 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 82473 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 82412 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 82351 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 82290 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 82229 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 82168 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 82107 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 82046 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 81985 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 81924 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 81863 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 81802 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 81740 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 81679 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 81618 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 81557 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 81496 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 81435 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 81374 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //