Array 1 850-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNB01000001.1 Clostridium sporogenes strain Colworth BL210 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 849 29 100.0 37 ............................. AGGCAAATACGGTGTAAATGGGTGGTATAGAATAAAA 783 29 100.0 37 ............................. TTCTCTGGACAATTATCGTCCGCAGGTTCAATTGCTT 717 29 100.0 37 ............................. TCTTTATACCTTGCAAGGTGTGAACTATTTTCATAAA 651 29 100.0 37 ............................. TCTTTATACCTTGCAAGGTGTGAACTATTTTCATAAA 585 29 100.0 37 ............................. TCTGCTGTCATATCGCCTATTTTATTATAAGTCTTAA 519 29 100.0 37 ............................. CCGACTCTATCACCTTCGGGAATCATTTCTATATCCT 453 29 100.0 37 ............................. TTGATATTTGCAAAGATTGTTTCAATGAATTTTTCAA 387 29 100.0 35 ............................. TATTACAACTCCCCTTATCCGTAAACTTCTTAATT 323 29 100.0 37 ............................. ATGAATGAGGAAAGAATGAAATTGCAGGCTAAGAAGA 257 29 100.0 33 ............................. GTAAGATTTGTCATATACATTTGAATTTAAAAA 195 29 100.0 38 ............................. AAGAAGCTTATGATAAAGATATTGTTGCATGGACTAAA 128 29 100.0 36 ............................. AGAAATAAACATATTTTTAGGCGACATAAGTTAAAG 63 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 100.0 37 CTTTTATATTAACTATGTGATATGTAAAT # Left flank : AGGTGATGATATATATAAACCATTAAAAGCTTGGTGGTGATAATTTATGTTTGTTATATTGACATATGATATAGAAGAAAAGAGAATTAATAGAGTTAGAAAAACGCTAAAAAAATACTTAGTTTGGACTCAAAATTCTGTGTTTGAGGGAGAAATAACAGAAGGAAAGCTACATAAATGCCTTTCTGATGTTAATAAATTAATTGACAAGAAGTTTGATTCAGTATATGTTTATAGAGTAAAAAATTCTAAAAATATAAAAAAAGATGTAGTTGGCATAGAAAAGAGTTTTGATGAATTATTTTTATAAGTAATTTTGCATTAAACCTAATTTTGAATTGAGTAGGCTTAAACTATTGATACCACTAGCTTTATTGCCAATAAAAAATAAATACTTAAACCGCTACTGAAGGTTCACTGCAAAATACGAAAAATATGATAAACTAAGCATTGCTATAAATACAGTAATATCAGTGCTTACAGACTTTTTAAATTTTAGG # Right flank : TCAGCTTCAGCTTTAAATAGAACTTTAAGATATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 10195-8464 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNB01000106.1 Clostridium sporogenes strain Colworth BL210 contig00106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 10194 29 89.7 38 ........A.........C........G. AAGAAGCTAAGGATACAGAAATTGATGGATGGACTAAA 10127 29 93.1 36 ...GA........................ AGAAATAAACATATATCTAGGCGACATAAGATGATG 10062 29 89.7 36 ...........T......T..G....... ACATAGTTTCACTTCTGGTAATCGCTTTTGTATTTC 9997 29 96.6 37 ..........................T.. ACAAATTTCATAAGTTTTTCTGATTTCAACTTACAAA 9931 29 100.0 35 ............................. TATTCTTCTTCATATCTATCTAATGCAAATGTAGC 9867 29 100.0 37 ............................. ATGCTAATACAAGCAGTACCACAAATTATAAATTCAT 9801 29 100.0 37 ............................. GCGATAATATCAGCTGCAATAGCAATAATGTTAGCGT 9735 29 100.0 37 ............................. GAAGTGGCATTAATAACATACACATATAATCTAAAGT 9669 29 100.0 37 ............................. AATTGATGATATTGACAATGCACAAACTAATCCTAAA 9603 29 100.0 35 ............................. AGGATTATGAAAGAGAGTTTTTAAATAAACAAAAG 9539 29 100.0 36 ............................. CAGTAACTTTATATAAAGAGCTAAAAGAACAGTACA 9474 29 100.0 36 ............................. CAACAAATTCGTGACAAATTACAAACTTTAACAAAT 9409 29 100.0 37 ............................. ACAAAAATAGATTATTTGCAAAATGCTTATGGTATTG 9343 29 100.0 36 ............................. GAGGACATGCTTAAATTGCTAAAAAACTTATAAAGC 9278 29 100.0 37 ............................. GATTTAAACAATGTAACTACAGGCTCTATGTATATGT 9212 29 100.0 36 ............................. ATTATTAAGAATCTAATTTCCTTTTTCATTGTTAAT 9147 29 100.0 35 ............................. TTATAATGTGTAGTCAAGTAAGGGTCCACATACTG 9083 29 100.0 36 ............................. AGAATTTAAAAATATTATGGGAAAGGATATTTCTAA 9018 29 100.0 38 ............................. ATACCTTATATATATGTATATCATTTATATTTTTTTTA 8951 29 100.0 37 ............................. TAGGAAGTTTTAAGCGTAACGTATGGTTCTGGTTAAA 8885 29 100.0 36 ............................. AGGTAAGCGTGAGGTAAGTTGTGGGTATGAATGTGA 8820 29 100.0 37 ............................. GTTGTAATTCCTAGTATAAATAACACATAATCTCTTT 8754 29 96.6 36 .C........................... TCTAAAATAGAATGAGTAGGATTAAAAGGTTTATCA 8689 29 100.0 38 ............................. AGGATTGGCCTTAGGTATATTAGAAGATCTAGACAAAG 8622 29 100.0 36 ............................. TCAACTGAGTTTGCAGAACAGGAAGACGGAGTTAGA 8557 29 100.0 36 ............................. AACAGCAATAAAATAATTAAATTAGTAGAATTGAGA 8492 29 89.7 0 .............A......G..A..... | ========== ====== ====== ====== ============================= ====================================== ================== 27 29 98.3 36 CTTTTATATTAACTATGTGATATGTAAAT # Left flank : TGTAAGGTGTGTCATATACAGTTGAAGTTAAGA # Right flank : CATGTTTCATCTATCATTAAAGCATGCTCAACAATGGATTCTATATACTCAAATATTGAGAACCTAGTGGTATCAAAATCATAATATGTAGCTAAATTTACTTCTTCCTTCTTTAGCGAAGCGAGAAAGGGTTCAATGTAGGCATTATCATAAGGACAATCCTTACCGCTGAAAGAGTGAATCATATTAATTTCTTTAAATATGCTTAACTGTTATCAAGCTTAATTTAAGAGTTTTGGAAAGATTTATGCTAGATTACTGTAAAATTAATCAAGGTAGAAAGAAATCTGCCTTGATTTTATCTACTTCTATAAGTTTGTATATTCATCCTATGAAGGATTTTAAAATTTATTATAGAATACTTAGTGTAGTTAATGAATGAAATTGTACATAATCTAATAAATTTTTTAATAATAAATACATATTTTTTTATTTAGGAAAATAAACAGGGGGTTATACTAATGAAGATAATAGTTATTGGGCCTAGAGGGAAAATGGGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 15371-15009 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNB01000013.1 Clostridium sporogenes strain Colworth BL210 contig00013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 15370 29 100.0 38 ............................. AAGGGTACATTGCCAACAACTACATCAAAATAATTATC 15303 29 100.0 38 ............................. AAGGCTTGAATCAAGTCAATAAGTGGGTTTAAGGCTCC 15236 29 100.0 38 ............................. ATTTTAGTTGATATTAATTCAGAACCTCATGTATTAGT 15169 29 96.6 36 ...........G................. GGCAGGGAGCTATTTTTTTCTTTTTAAATTTATTTA 15104 29 96.6 38 ....................G........ TATATTACTGGTACAGATATAAGGATTATTCCTAATAG 15037 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 98.3 38 GTTTTATCTTAACTATATGGAATGTAAAT # Left flank : GGTCAAAGAGTTGAACAAGCTACATTTGTTTGTAAGAGATGTGGACATAAGATTAATGCTGATTACAATGCAGCTAGAAACATAGCTATGAGTAAAGAATATATATCAAAAAAAGAAGAAAGTAAGTATTACAAAAATAACAAAAATATGGTATAATTAATGTCAGTTAAGATAATAAAAACAGGGCGATTTAACGTCCTAAGGCTGAGAGATATTTCTACTCGGCAAGGGTTAATCTCGGATATTATGTTACCATCTGAGCGTTCCATAATTAATGCGGGTTATATGCTCGCATTTTAATTTTAATTAATAAATTTGCAGTGAACCTATTTTGAAAGCTTGAGCCTTTAAAAGATTGTAATGAAAGGTGTTTGAGTGAATTTTATACATTATATAAAAACACTACTGAAGGCTTTACTGCAAAATAACAGAATTCGGTTATATACTTATGTTATTGAACTTAGTTTATATCAGTAGTTTAAGAGATTTATAAAATTAGG # Right flank : TTTGTAAATATCATCAATATATTTGCTTTTTATATTGTTTTTATTTTAATACTGCGGTTAAGATTAGGAAAATTTAATATTTATTTTTAAAAAGCTAAACTTTTAATAAGTTTAGCTTTTTTAGTTATAAAACAATGAAAACATAATATATTAGGTGTATAATATTGGTAAATATTCCTTTGAGGCGGTGATATGTTAATGCATCAACTTATTAAAAAATATAGAGAAGGTGACAATAGAGCATTACAAAAAATAATAGATAATTTTATTCCTCTTATTTTAAAGGAAGCTTCAAAGTATAAAATAAAATGTTATGATTATGAGGATTTAGTTCAACATGGCTATTTATCTGTTATAAAAGCTGCAAATATGTACAAGGGAGAAGATAAAAACTTTAAATTCTATTGTATTAAGGCTATAAAACAAAACTACAAAGCACTTCTAAAAGGTGAAATAAAGCATCATCGAGAAATACCAAATGATAAAGATATATATCCTTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 18963-18800 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNB01000022.1 Clostridium sporogenes strain Colworth BL210 contig00022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 18962 30 100.0 37 .............................. GTAATTAATTTAATATTAAAAGCTTTAAATGTAAAAG 18895 30 100.0 36 .............................. AATATAACAAAGCCAAAGAAGCTTGATTATTTATAA 18829 30 93.3 0 .......T.......G.............. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 97.8 37 TTGAACAGTAACATAAGATGTATTTAAACA # Left flank : CAAAAGCCTATATCCATGTATTTACTTTGTTTTTTGTAGTAAACATTTATGATATGATTGTTCTAGATATAGGTCTTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAAGATATGGATAAAGAATATAGAAATCCATGGCATCATATAAAAGGAGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGGTTCATTTCATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTCAGATTTGGTGTGAGTGGCTTACTACTTCGAGAATTGGAGAAGTAGTTTCATAAATTAAATTTTCCAACCACAATAAATTTTAAAACCTATTCTAGCTATTGATATATAAGGCTTAGAATAGGTTTTTGTTTTATATTTATTAAAAAACATAATCACTTGGAAAAATTTCTGCAAAACCTTGTAAAATCAATACTTATATGCTATTCTTAAAATTAAGAAATGGCTATTTTACTATG # Right flank : AATTAAAATCCATGATTTTTTCCCTTTAAATTTGTTTAGTTTTTAGAGCAGCGTTGATAATATATCAATTTTTAAGAGAAGCCATTTTAGACTTCTCTTAAGTGGTATTTTATTTAATTGTATAAAGTACATTAGTTAAAACTTATTTTTTCAAATGTACCCTTTTCTATGTGTAATTCAATATCAATATCTGCTTTTTTATAACCTACTAATTTTATACGATTATTACCTTTTTTTATTGGTAAAGTTAATGATGTTGTTCCTTTCATAGTGGCTTTATCTGTATTTTCTACAAGATTAACAACCGTATTGTCAGGAGATATTAAAACGATTTTTGCCTTTCCACTTTTTACTGATAAGATATATGGAACTTTCAAATCAAAATCAGATCTGTTACTTTTACTTATAACTGCATCATTTATATTTGGCTAATATAAAATTTATTGTAGTTTTACTTATTATCATAGTTTTGTTTTTTTGTCAAAAAGTAATGAATCATT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACAGTAACATAAGATGTATTTAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 25780-25555 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNB01000022.1 Clostridium sporogenes strain Colworth BL210 contig00022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 25779 29 100.0 37 ............................. TTTGATAATTGTACTTGCTATAATAGAACTATATTCC 25713 29 100.0 37 ............................. TTCTAATATGAAATGTACTCTTCTAAAGAATTGCTTT 25647 29 96.6 35 ...............G............. CAGAAAAGTAAAGTTAATAGTTTCCTTTGCCATTT 25583 29 86.2 0 ........T......G.......C....G | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 95.7 37 GTTGAACAATAACATAAGATGTATTTAAA # Left flank : AAATCACTTGGAAAAATTTCTTTAAAACCTTGTAAAATCAATGGGTATATGCTATTCTTAGAAATAAGGAATGGCTATTTTGCTATGGTTGAACATTAACATGAGATGTATTTAAACAAATCTATATTTTCATTATAGAAAAACATTTAATCCGTTGAACAGTAGCATGAGATGTATTTAAATATTAAATACTCGCTTTTTACCATATCTGTCATGCTAGTTGAACATTAACATAGGATGTATTTAAGCAGGGAACCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCTTTCATTATTGAGCATAGTATATATAATTAAGTTTTTTCCAAGTGAATTAAAGATAAAAACCTACTCTAGTTATTGAAACATAAGGCTTAGGATAGGTTTTTATTATGAGTTTTCAAAAAAGCAAAATTACCTGGAAAAACTTCTACAAAACCTTGTAAAATCAATGGGGATATAATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : CAAGAAATGCAATCATCTGATTTAGAATAATCATTTATACATGGCAATAATTTCTTGCTTTATTACTTCTTGAGTTAAATTGTGGGATTTTACTGACTAAAATATTTTTCAAAATTAGTTTTAGTTTCAGATTATAATTTAGAGTATTATTGGAATTTTAGCCCCCATTAAAAGAAGTTAAATATTTTCTTTTAATGGGGGCTATATAAATTGTTAGATACTAATTATTTAAAAATTTATTTAATGAATCATTATCTTTAAATAAGTTTTCTAAGTTCCCATATTTTTGTTCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTGTCTACATTAAATTTAATAATTTCAGCGTTTGTTATGAGAGACAATAATACCACTGCATTCTTTTCTAAAAGTTTGTTAGCTTTTTTGTCACTCCAAAATTTATTATAATTTTCTTCACCTAAATTTTCATTTGCTTTATAGTTAACGGTTATTTCATAGGGCTCT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAAGATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //