Array 1 192984-191086 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDSY01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain inss14 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 192983 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 192922 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 192861 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 192800 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 192738 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 192677 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 192616 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 192555 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 192494 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 192433 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 192372 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 192311 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 192250 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 192189 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 192128 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 192067 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 192006 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 191945 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 191884 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 191823 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 191765 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 191704 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 191643 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 191582 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 191521 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 191460 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 191399 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 191338 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 191237 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 191176 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 191115 29 93.1 0 A...........T................ | A [191088] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 210882-209266 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDSY01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain inss14 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 210881 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 210819 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 210758 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 210697 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 210636 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 210575 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 210514 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 210453 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 210392 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 210331 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 210270 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 210209 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 210148 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 210087 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 210026 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 209965 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 209904 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 209843 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 209781 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 209720 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 209659 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 209598 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 209537 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 209476 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 209415 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 209354 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 209293 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //