Array 1 8629-5977 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQR01000010.1 Cronobacter sakazakii strain GK1035 csakGK1035_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8628 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 8567 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 8506 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 8445 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 8384 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 8323 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 8262 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 8201 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 8140 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 8079 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 8018 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 7957 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 7896 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 7835 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 7774 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 7713 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 7652 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 7591 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 7530 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 7469 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 7408 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 7347 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 7286 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 7225 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 7164 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 7103 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 7042 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 6981 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 6920 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 6859 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 6798 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 6737 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 6676 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 6615 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 6554 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 6493 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 6432 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 6371 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 6310 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 6249 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 6188 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 6127 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 6066 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 6005 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : AACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 479060-479208 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQR01000009.1 Cronobacter sakazakii strain GK1035 csakGK1035_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 479060 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 479120 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 479181 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCG # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 591454-590326 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQR01000004.1 Cronobacter sakazakii strain GK1035 csakGK1035_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 591453 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 591392 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 591331 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 591270 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 591209 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 591148 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 591087 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 591026 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 590965 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 590904 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 590843 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 590782 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 590721 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 590660 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 590599 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 590538 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 590476 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 590415 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 590354 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : ACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //