Array 1 7942-8833 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTWO01000054.1 Bacillus cereus strain AFS009443 AFS009443_115_F8_Contig45_140618, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 7942 32 96.9 35 .........T...................... CAGAAAGCAAGACTCTACTTCGATACAATCTACGG 8009 32 96.9 35 .........T...................... TTTTGTTGCGCCTAAGTCTTTCCAAGGTCCTTTTA 8076 32 93.8 33 .........T.A.................... CTTAGAACCTATAAAAGAACAACCTTCTACCAA 8141 32 96.9 34 .............A.................. TCAGAACCTTTTTTAATAATGTAAATAAAGATCA 8207 32 96.9 34 .............A.................. ATTTGGTAGCGCATTGTTTATGGATGCACGATTT 8273 32 90.6 36 .......T.T.....A................ ACAATTCCTCGTGGTATGAACCCTGAAGATGTTAAA 8341 32 96.9 33 ...................T............ ATGCCAATCGGTGTCCAAGCCGACTTCATTAAC 8406 32 90.6 34 A........T.A.................... CCCTGCTGATGCAACATCGCTACCTGCATTTTGT 8472 32 96.9 34 ....................A........... GAAAAAACGCTTGATGACTTAATGCGAGATGAAG 8538 32 90.6 34 ..A......T.A.................... GATGATACAGAAAAAATAGTACCAACAATCCGAC 8604 32 100.0 34 ................................ TCCAAGGGGGAACTGGGAGAAAGTAACTTAATGG 8670 32 100.0 34 ................................ GAATACGATTATCAAGATGAAAGCACAAAAAAAG 8736 32 96.9 34 ...................T............ TACCTCGGGTTTATATTTATCTGGAACGCTCATA 8802 32 93.8 0 .........T....G................. | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 95.5 34 GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Left flank : TATCTAGTTATATATTAAAAGTTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTTTGAGTTAGCAAAATAAAGGAATTTTTAGTATTCAATATTCTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATAAACTTGATAGGTAGATAGAGAGACAATATATAGTGAATTTTATTGTAAATTACGACTCAATATATTAAGGGTATTATGAAGCTATACATTTTTGTTAATTAGTTAGTTAATAACTATGAAAATAAGGTCGAATATATTGATATAAAAGAATGAGTTGATTTAGAAAACCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATAAAATTCCTAATACATTCGCACCTAGAATTCTCATGCTTTATGATGGGAATTTATGATTTTTTATACAAATTAGTTTATTAAATAAAAACATTTTTATATTTTTGGATAAAACTAACGTATTTGTGGTTGATTTCGAACACAAATCGGT # Right flank : TAGTTTAGTAGATACTCAACTGGAAGTATCTACATCTGCAGTATCTAACAAACATGTAAAAAATATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATTATATCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTATTTAAATAGAGTACGAGATAAGCAATT # Questionable array : NO Score: 8.28 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 15088-16306 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTWO01000054.1 Bacillus cereus strain AFS009443 AFS009443_115_F8_Contig45_140618, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 15088 32 84.4 34 ......T..CT.GC.................. AACCAATCGAATATAAACGTGGGAAACCGAAAAA 15154 32 100.0 34 ................................ TTTAATACGGCTAAAGATTTACTAGCTGGATTAA 15220 32 93.8 32 .C..................A........... TCTCAGGGAAATTAAATCCCATGCTACCACCA 15284 32 100.0 33 ................................ CCGTCAAGGTCTGCATAATCATTAGGGTCTTGT 15349 32 100.0 34 ................................ TACAATACTTACAAAAAAAGATTGGCACTCATTT 15415 32 100.0 35 ................................ TTTTTCATTAAGAGCATGTGGTTTGAAATATTGAA 15482 32 100.0 35 ................................ ATTTTGGTACAGGATTTGCAGCAGGTATTGGAGAG 15549 32 100.0 34 ................................ AGAGGGCGTTGATTATGTGTAGGAAAGTAATTTT 15615 32 87.5 33 ..........TG..G......A.......... GATAAAGGGTTTGCAATCATAAAAGATATTGTT 15680 32 90.6 36 ...A......G........A............ TCTGAGGGGACACCTTATATGGAAGAACTAAGAGGA 15748 32 93.8 33 ...A...............T............ TATAAAAAAGAAGTATGTTGATTTAGTTAAGCA 15813 32 93.8 35 .........G...A.................. TCAATACATAAATCCAAAAAACTAACAATCGGGTC 15880 32 93.8 35 ...........C....A............... ACAAATGAACGTGTAACAAATGGATTTTTGCTACT 15947 32 93.8 33 ...........C...C................ TATATTGGTCGTACAGTTAAATTAAATCGTCCG 16012 32 90.6 33 ..................AT...A........ CACCCAAATATCGGAAAATTATAGAGTTTTTTA 16077 32 81.2 34 ....T....CT.T......T..T......... CTCAATAGAAATTGTGGAAGTTTGAAACACAAAA 16143 32 65.6 34 A..AA...CCT......G.TA.......GG.. TTTTGTCATCACATCGTATTTACTGTACATGCTG 16209 32 87.5 33 C.........T..AT................. CCGTTAACGAAAATATAAAAAGCATACGTGCCG 16274 32 75.0 0 ....T....C.......CA.....T.A.G.C. | A [16296] ========== ====== ====== ====== ================================ ==================================== ================== 19 32 91.1 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACGCAATTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTACACTGTTTGAAAATGATGCATCAGCAGCACGACCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGATCATAATTCAAAAATTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATCGATGATTATACTGTATTGGTACATGAATTAGATGATTTAAAAGTTGAGGTTATTAATGGAATGTAATAAAAAGCGTCAGAATAGTTGAACGAAAGTATCCTTATAAAGATATACTTTATCAATTTATTAAAGGAAA # Right flank : TGGTAAGATGCTTGATATTAATTTAGTGCCTCTGCTGGAGTAAGTGGCACTGCTTCAATTCATACAGCAACTAGTGTTGAACCAATTGACATTACTAGTATGCAGATTACGAAAAGTATAAATTCTGATCCTGAGAAGGATAAAGTTTCAGATACGATGGGGATGAAGCATGGTGTTGATCTTGGAGCTTATATTTTTTATGGAAGTATTCATATGTAATAAGCAAGGAGACAGATTCACCAAAGGTGATGCAGAAAAGATTAAAAATGAACTGGTTACATTGTTTGGAAATGATGGGTCAGCAGCATGCCCTGAGGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGAAACATAATTCAAAAATTGGCCAGTACTCTTCCGCAAAAGTACACCGTTTACTGGATGTTAAGCGGAACATTGACAAACCAAAAATAATTGATGACTATAACATTTTGGTAAATGAATTAGATATTTTAAAAGTGGCGATTATTGATGGAC # Questionable array : NO Score: 8.27 # Score Detail : 1:0, 2:3, 3:3, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-36] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //