Array 1 2639-2965 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCOC010000035.1 Megasphaera massiliensis strain DFI.1.8 LFDCGANH_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2639 36 100.0 38 .................................... AAACTCACCGTGCTTTTGAAAAGATTCCATTCTTTCTC 2713 36 100.0 37 .................................... TTGATACCTGTAATTGTCGACGGATTTTCGAAGCAGT 2786 36 100.0 35 .................................... CTGCGAACCAATGTTGCATCATGATCCGTAAGATT 2857 36 97.2 37 ......T............................. TATGTTGCTTCAAGTTCAAGCGGAGACCCTCCGGATT 2930 36 94.4 0 ......T..........................G.. | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 98.3 37 GTCGCAGTACCAAAATCCCCGTAAGGGGACTGAAAC # Left flank : ATGCCATGCTGAACTTTGCCGTCAGCTGCAAACAGTACGTGAAAAACGTCGTCCTCACCGTCGTCGATAAAGTCGAAGACAGTGAAGAAATCAAGAAGTGCCGGGCCATCTGTGACGACTTGGGCTTGACCTTGCGGGTCCGGGTCTACGAAGATAAATAGAGAATCAGGCTATCATAAGATTATCTGAAAGAGCTGTCTCACGACGAGGCAGCTTTTTTGACGACGGGGAAGCCTCGATGAGAACGTTGACAATAAAAGGTGAAAACCGTATACTTGAGATAAATCAAAGACTGCGGCGGCTGAGGAAAACCTATTTTTGGCTCAAAAACCCCGGAGGTTTGAAAATTTCAAAAAGCGCTGCAAATGGCGTAACTAAGGGAAAAAACGACACTGTCCAAATTTTATTTTTCACCCGGGTCCCCGAAAAGAGCGAAAAAAGCCTTAGGTTTGAAAAAATCGCCGGAGAGCCCAGACAGGGAGCGGGTACTGAGGGACAGA # Right flank : CTTCAGGACTACTTGCTAATGATGTACAGCAATGTGTCGCATTCCTATTTTCTTAGCCCTGATGTGACTCCTTTTTATAAAAGGGGGATATAGGGGAGCAACATTGAATCTGCTATGAGAAAAGCCGATACCGTCATCTATTTGAGATGTCTGGTATCGGCTTTTGTTATGGGTATCGAATTGGAGAAATACCTAGAAAAGATCAAAGCCCGTTCTCGTGATGAGAGCGGGCTTTGTCGTAGGACGATGATTTTTTACGATAAATAATGACGCACCTGACAGGCCGTGTGGGCTAGGACCCACGATGCGGAACACAGGGCAAGGGGAGCAGCGGCGATGACGACGGCCAGGTTTCTGGTTTCTGTCGTCATCGTGCTGTGCGTCAGCCATATAAGGGCTTTGAGGACGGTTTCGACAGTGACGCAGGCCGTAAACATGGCGATGATAAAGACGGCGACGGCCAAGGGCAGCATGATGAGATACGAGAAGAGATAGGTTGT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTACCAAAATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCAGAGTACCAAAATCCCCGTAAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2201-2704 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCOC010000034.1 Megasphaera massiliensis strain DFI.1.8 LFDCGANH_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================================================= ================== 2201 23 87.0 89 ........A...A.....A.... AAGCTAACTTGTGATTCCGAACAACCAATTATTTTGTTAAGAACGACTGAACATACTCCTTTCCTGATAAGAAAGGAGGCTATGCAGAG 2313 23 95.7 51 ........A.............. CGCATTTTCATATACTTCATTTGACCTATATTTCTTGCTGTTAAGAACCTT 2387 23 95.7 53 ........A.............. CCCCTGATTCTCGGGATTGTTCCCAGCCGCCAATCATGTTTGTTAAGAACCTT 2463 23 100.0 49 ....................... ACCTCTGACTCATAAGTCGTATATGAAATCATATCTTGTTAAGAACCTG 2535 23 100.0 47 ....................... GACTGGACTTTGTCCGGGTCCTAGGTTTGCGACTCGTTAAGAAACTT 2605 23 100.0 54 ....................... CTTGCATCTTGCGTATGCCATTGCAATTTCTCGCTTTCTGCCGTTAAGAACCTC 2682 23 87.0 0 ........A............CG | ========== ====== ====== ====== ======================= ========================================================================================= ================== 7 23 95.1 57 AATCCCCGCAAGGGGACGGAAAC # Left flank : CAGTCTCCGTGGGCTGCTGCGCATAAAAATGGCGATAAGCACGCTACCATATCAAAAGAATCGATTAAAGCCTTCTTTGAAAGTAAGCCGCCCATCCCTGAATTCACTATTCCCTACCAAGAAAACCACTTTGCAGGATATAGAGATAAGGACGGATATTTAGTACTTCCCAAGGAATGGGATGATGAAGCGTAGTTGGGAAGTATGGTGGGGCGCCTCGCAAACTGTAAAATTGATGGCGTAGTTAAGCCAGTTGTAAGGGGGCTGTTAAGAACCTTAATCCCCGTAAGGGGACGGAAACGCGTTAAGCTTGCAGTCGATCCAGTTTCTAGCCTTGATGTTAAGAAACTCAATCCCCAAAAGGGGACGGAAACTTGGTATACTTACCAATGTAGCTATCTTCAGCTGTTTTCTGTTAAGAACCACAATCCCCGCAAGGGGACGGAAACTTGTTAAATAACATACACATGTTTCAATCCGCGCCGCCCGTTAAGAACCTT # Right flank : GTTGTAAGATGTAAATTTGAAGACGGTATGAAAAAAGCCGGTACCAGGCATCTGTTGTGATGTCTGGTACCGGCTTTTTGTGTCGGGCTATTCTGTTGAATTGTACTGTTTTACGTGAAAAGGAGCAGTTATACCTTTATCGGTATGAAATGGGTTGGGGCAGCGTTAGGGGGAGCTTGTTCCGGATCTTATGGCCGGCATACTTTGCAGGGAACGTAGCCATAGGAGACGGCTTGGTCCCGGCTGTCGAAATAGGCGCGATTGGATTCGTTCATTTTTTGTTCCCAGCGGCAGCCTTGGTTGTGGAATTTCATGCTGGTCATGTTTCCCACATAGGTGGCTGAGGCGATGGCGGCCGTAGCTGTCCATAGGATTGTCGTTAAGGCAATGGCTATTTTCTTTTTCATGGCGAGGCTCTCCTTTTTTGTAATCTTTATTATCATTATAGCGAATATAATTAATTATGGAAAGTAAATTCATGGTATTCATTAAAATCTGCG # Questionable array : NO Score: 4.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-1.12, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 61541-61778 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCOC010000015.1 Megasphaera massiliensis strain DFI.1.8 LFDCGANH_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================================== ================== 61541 23 100.0 54 ....................... AATTAATACTTGTTCAACCATGTCAAACCGAATTTCGTTGCTGTTTAGAACCTT 61618 23 100.0 47 ....................... AGGGTAGTCTTTCCCTCGATAGCAAAAAGTTCCGAGTTTAGAACCTT 61688 23 100.0 45 ....................... TTAATGTCGCTAAAATTGGGCTCTTCGGCCTGAGTTTAGAACCTA 61756 23 87.0 0 ........C..........G..G | ========== ====== ====== ====== ======================= ====================================================== ================== 4 23 96.8 49 AATCCCCGTAAGGGGACGGAAAC # Left flank : TAACAGCGTAAGCCCGATGGGGCAGATCTAAAAATAGAGTAGTAGCTTATAAAAGTTACTACTCTATTTTTTATCGAAAGCGGTAAGGCGGGTTCCGATTTAACGGTAGAGAATCGTTTGAAGGTTGACGGTCTGGGGAGAACCTGTCTTGGTAAGGGATTGGAGAGGGGATATTTTGGGATTTCCAGATCTCAAGCAATCGAAGCTCATGTCCATAAACCCCCCTTTTGGAGAGCGCTTAAAAAAGGTATTTCATAGCGGCGTTGTCGGAAAGTACTATGATATCCGCCAAAGAATTTCAAACATATGGTATAATATAAATAGATTTACGGATTTTATACCATTCTGCCCCCGATGGGATGAAACTGCGGCTGATGGGGATTTTTGAAAGAAACTTTCAGCGAAAAAGCAGAAAACAGCCGAAACATAAAATCCGCCCCGCAAATGTCCTTTTCAATGGCGTAACGAAGCCATTTGTAAGGGGTGCTGTTTAGAACCTT # Right flank : GCTTTCTGCTTTGAAGCGTAAATCTGAAGTTGGAATGAGAAAAGCCGCTGCGGGCATCTGTTTGTGATGTCTTGCGGCGGCTTTTTGCCATGTAGGAGTACTTGGTTGGGTGAAGGGGTACGAAATGATCGTATTGTAGCTTTTACGTAGAGGGACGATGGAGTTCGGAGTATGATGCAGGATGTCCTTTTTAGAGCGACGTTATCATTAGATCCATGCTATAATAGAACTAAAAAAGTGCGGAAAAAGGCATTCTTCAAAGCACGAGATAGGCGGTATAAGAATATGTCTCACGAAGAAAAACGGGTATGGGGGATTCATACCACAGATGATAATTTATTTTTGCAGCAGGCTGTCATCGCCATTGGTTGGAAGGCTATGGGCGATTTGAGCCGGATCGAAGCCAATCGGGAGGCTTTCAAGGAAAAGTACGCTGCCGTTTATCCTGATGCCAAGAAGGGCCGTGTTTCCAATCATGTTGGCATGCTTTATCGCTTTGT # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.29, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 39973-40216 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCOC010000016.1 Megasphaera massiliensis strain DFI.1.8 LFDCGANH_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================================== ================== 39973 23 100.0 53 ....................... GTAACTACATAATGGCAATGGCCGTTAATCGGTTTATGGCAGTTAAGAACCTC 40049 23 91.3 48 .......TC.............. GGTAGAATGACAGGCTATCCATGGCCTTATTGGTAAGTTAAGAACCTC 40120 23 100.0 51 ....................... TTCTTGCATTTTTTTCGTTCTGCTTAATCTGTTTTAGGCGTTAGAAACCAT 40194 23 73.9 0 ...............G.T.TTTT | ========== ====== ====== ====== ======================= ===================================================== ================== 4 23 91.3 51 AATCCCCGTAAGGGGACGGAAAC # Left flank : GGCCTGGATCCTACTGACCTATCAAAATGGCCAGTATACCACCGTCAACGACGGCATCATCCTGCCCTTTGTAACGAAATAATGAGATAAGAAACTCGGTGGAAATTCTCTGATATCAGACACATTTTTCCATGCTAATCAGGGATTCCAGAATACTTTTGGCAGATAATGAGGATAATTTAAGTGCTTTCCATATTAAACAGGGATGATTGAATAAATCATCCCTGTTTATTTTATGCAGTAAAAAGTAAGTATGACTTGAAATGCTGTATAAGTATATAGTGTATAAAAATATAAACAGTGGTATAATAAATATAGTTGATTGAAGACGGCATTAAAGCATATTCCACCCCGCAATAGCAATGATGCCGATTTTCATAGTTTATAGTATCAATTATCAATATAAAACGCTGAAAAACGGCAAAAATAAAATCCGCCCCGCAAACGCCATTTTTGATGGCTTAGTTATGCCATCTGTAAGGGGTGCCGTTAAGAACCTC # Right flank : TTGGACGAAAAAAGCTATGGATTTATGTTTGTATACATGGGTCCATAGCTTTTATGTTCTATGGATGGTATTGAATCTTTAGAAACATGGTGTGGGGTAATTTTTGATTACGGTGGCTCATTTACTTTCATTAGAGATTTCGCTAATTGGCTGTGATATGATAGAATGAAGGTATAATCATGGATGGCGGGGTGAGGGTATGGCCTATAACGTACCGGATGTGGTTTTGCAGGATATTTCTCGATTTGCGGAGAAACATGGGATTCGTCGGGTCCTTTTATTCGGTTCCCGAGCCAGAGGGACGCAGACGGAACGCAGCGATATTGATCTGGCTGTCTGCGGCGGGGATTTTGACGGCTTTTACTGGGATATCAAGGAACATGCGCACTCTTTGTTGATGATCGATGTTGTTAATTTAGATGCTGGTGTTTCTGACAATCTGCAACGGGAATTGGAAAGGGATGGGGTCACGCTGTATGAAAAAGTTGGATAATTTTTCA # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:-0.40, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 157-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCOC010000167.1 Megasphaera massiliensis strain DFI.1.8 LFDCGANH_169, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 156 33 100.0 33 ................................. GATACCTTTCTGCAGCAGGTAGATGATCTACAG 90 33 100.0 35 ................................. GACCATTTTTTGAAATAATCTTCCAGTACGCTGAT 22 22 66.7 0 ......................----------- | ========== ====== ====== ====== ================================= =================================== ================== 3 33 88.9 34 GTCGTACCTCTTATGAGGTACGTGAGTTGAAAT # Left flank : TGAGGTACGTGAGTTGAAATGATTTAACGAACATCATAAACCAAATGAACAAG # Right flank : G # Questionable array : NO Score: 4.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTCTTATGAGGTACGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 49229-48902 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCOC010000007.1 Megasphaera massiliensis strain DFI.1.8 LFDCGANH_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 49228 36 100.0 37 .................................... ACCGGATGTTTTCGTCCCAGAAATCCCATGCCCACGA 49155 36 100.0 34 .................................... AGCATATATCTTCTTTTCTGTCTTTCTAAGCCAA 49085 36 100.0 40 .................................... TTCTTCCGGGACTACGATATCCCAGTAGCGCTGACTCCGG 49009 36 100.0 36 .................................... GCCGGATTACCATCTTCGACGGATCGAAGCTGGTTT 48937 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 5 36 100.0 37 GTCGTATTACCCAATTCCCCGTAAGGGGACTGAAAC # Left flank : ATCGTCAAGTCTATTACTTACGCATGATGAGCTATGATTACGTCGGTTATAAGCGCCCAGCCAAAGCCGTCTTAGAGATTCTTTACGATTACTTCCAAATCCGTACCGAGCGAAATCACATCAACCACGCCTACGAGGAAGACTCGCTGTCGACGCAAGCTATAAAAGACCTGGTCTTAGATTTGCTGCGGCGAATGGAAGACATCGATAAGCTCAAATCGTGAAAATATCGAGAGCTTGAACCTTTGACAAGATAAGTCAAAAAAAGTATACTAAATATAAATAAGGGTAATACGTTAGCCTGTGGAAAACCTATTTCAGGGTCAAAAACCCGGTAGGTTTGAAAATTTCAAAAAGGGCTAAAAATGGCGTAACTAAGGGAAAAAACGACACTGTCCGATTTTGCTTTTGAACCCGGGTCCCCGAAAAAGGGGAAAAATGCCCGAGGTTTGAAAAAATCGCCTGTGAGCCCGCTCCTAGAGCGGGTACTGAGGGACAGA # Right flank : CCGACTTCGTAAAGATCCTGCATGCATTTTGGATCCTCGTCGTATTACCCGATTTCGTCATTTCTTGACTTTTCATCGCAAACAAGATATACTTATCCGTAGCCGAATGATTGACTGTTTAGGCGCATGATTTAGAACTATTACAAAGAATGGTTCTATTCGTGCGCCTTTTTTGCGTACTTTTTGCCATTCAGTTTCTTTCCGACAGGAGGTATGCCTATGTTTACCCTTTATTATTTCGAAGGTCCCGGGTATGAAATTTTCCCCTTGCGGACCCGACTCAACGACATTTTCACATATCAGGCTCAGCACGCCGTCAATAAGTATCCTGACCTCGCTGACCTTGGCATTGAGCTCGACGATCTTAGCTTTGAGTTCGATGACGGCAGCCATGACCTGGTCCACATCCTCGACGCCTTGGAGGGGCCGAAGGACATTTGGCACGGCGGTGCTGTCTGTGAAGACATCAGCCCCGACGCCTGCCGGCAGCTGCGGAACGG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATTACCCAATTCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 2 52105-51480 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCOC010000007.1 Megasphaera massiliensis strain DFI.1.8 LFDCGANH_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 52104 36 100.0 35 .................................... ATTCCTCCAATCAGTCAATCTAAAATATAAAAAAA 52033 36 100.0 38 .................................... GTAGCCTCTACAGCCTTAAACTTAAACGCGTCGGATAA 51959 36 100.0 41 .................................... TTGCAGCGCGTCAAGTAGCGCGCAGAGAAGCGTTACTGAAC 51882 36 100.0 36 .................................... CCGGGAAGACCAAGTCGCGGCGTTCCGGTAATGCGG 51810 36 100.0 38 .................................... ATCCTGCGCAAGATGCTGGCTGGCTTCGATTTCGATAC 51736 36 100.0 37 .................................... TCCTTCGAAGCGGACTTCATATACAGTTCTTTTTTTC 51663 36 97.2 37 ............A....................... AAACAAAATGCAATAATCATGGAAATAGAGATGTTAG 51590 36 97.2 39 ............A....................... CTGCTTTTTTAATGCTATTAATCGTTTTCATAGTGATCC 51515 36 97.2 0 ............A....................... | ========== ====== ====== ====== ==================================== ========================================= ================== 9 36 99.1 38 GTCGTATTACCCGATTCCCCGTAAGGGGACTGAAAC # Left flank : TCCGAAAAGCCAATTACTTGCAAATGATGAGCAACGATGACGTCGCTTATAAACGCCCGGCCGAGGCTACCATGGAGATTCTCTATAACTACTTCCAAATCCGTAATGAACGGAATAACATCAACCACGCCAATGACGAAGACTCTTTGTCGACGGAGGCGATAAAAGACCTGGTCCTCGACTTACTGCGGCGAATGGAAGACATCGATGGGCTCAAATCGTGAAAATATCGAGAGCTTGAACCTTTGACAAGATAAGTCAAAAAAAGTATACTAAATATAAATAAGGGTAATACGTTAGCCTGTGGAAAACCTATTTCAGGGTCAAAAACCCGGTAGGTTTGAAAATTTCAAAAAGGGCTAAAAATGGCGTAACTAAGGGAAAAAACGACACTGTCCGATTTTGGTTTTGAACCCGGGTCCCCGAAAAAAGTGAAAAATGCCCGAGGTTTGAAAAAATCGCCTGTGAGACCAGTCAGGGAGCGGGTACTGGGAGACAGA # Right flank : AATGATGTACAGCAACGTGACCAGCATTGTAAGTACGTCGTATTACCCGATTCCCCATCTTTAATGTGACTCCTTTTAGAAAAAGGAGGGAATGCCATAGGGGACGGAACAACCTCCGGATGTAGGAGTTGGTTCCTATATTCGGAGGTTGTTGTAGTTTTATTTAGTCTAAGAAGGGTACGGAGCCTGCGCCATAAAAAGAGGTGAACCGATGAAACATATCCTGCTGATGTTTTTTAGTGAAGCACGTCTCCATCACGACGGCATGATGATGGACGGTGTCCGGGACAAGGAATCCGTCGTTCAAAGTATTGCTGATTCATTAAAAGTGCAGGGAGAACAATTAGACTGTCTGTGCTGCTTTTCAACGAAAAAGCTGCCGGAAGAGATTGGCTATGGCGATGAAGTCAGTTGTGCGTATATCCTGAATCATGAGGCCTTAATCCCAGCGCGGATGCAGTCTCTTGCCGGACACTTCATCGGCATCGATTATGATGAAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATTACCCGATTCCCCGTAAGGGGACTGAAAC # Alternate repeat : GTCGTATTACCCAATTCCCCGTAAGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 3 60472-59173 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCOC010000007.1 Megasphaera massiliensis strain DFI.1.8 LFDCGANH_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 60471 36 100.0 38 .................................... TTATGGCGCGAACACTTTTCCACCAGGCCGCGCTTTGT 60397 36 100.0 43 .................................... TCGCCACGCACGCGAAGAACAAAAAGGAGGCCAAAAAATAGGG 60318 36 100.0 39 .................................... TGACGTTAGCACGATAACCATAAAACGGATTGTTTTTCT 60243 36 100.0 39 .................................... CACATGGATAATTTGGATTATGGTAGTTTGGCTGCTCAT 60168 36 100.0 38 .................................... CCGCATCGAGCATGATACGCGAAAATGAGTTGTCACGT 60094 36 100.0 36 .................................... TCGTCGACTTCCATCCAGGTGTTACAGTCGTTACAG 60022 36 100.0 38 .................................... TCGTCTGTCTTTCCGATAACGGCAATGACGTTATGCGT 59948 36 100.0 36 .................................... TTACGTGTATCCACCAAAAGGATTGCACTTCAACGA 59876 36 100.0 37 .................................... CACCATTTGATACCTGTAATTGTCGACGGATTTTCGA 59803 36 100.0 41 .................................... TCGTCGACAGCTGCTTTATAGGTAGCTTCGATAATTTCGTC 59726 36 100.0 36 .................................... AGCGTTATCTAACGCCTCTCCGAGATTTTTATAGAA 59654 36 100.0 38 .................................... TACGATTTAACATTAAATCGCGATAAGAAAATTTTAAC 59580 36 100.0 40 .................................... CCGGCGGTAATGCCGTTGCGGCCATCACAAAGCAGCGCAT 59504 36 100.0 37 .................................... CGCTTAAAGAGCCATCCGTATTTCTCGATGGCTTTCG 59431 36 100.0 38 .................................... GAGTCAGGGCGACTCATCGCTGCTATTGTTTTGCATGT 59357 36 100.0 40 .................................... TCTTGGAATAAAGCCATCATTTTATTGAATGGACGTTCTC 59281 36 100.0 36 .................................... ATCGCCAGTAAGACCATGAACGAGAGAAAGTCATAC 59209 36 77.8 0 T.G.AGC.....................T....C.G | T [59192] ========== ====== ====== ====== ==================================== =========================================== ================== 18 36 98.8 38 GTCGTATTACCCATTTCCCCGTAAGGGGACTGAAAC # Left flank : ATATTTACGAATGATTGCTTATGGCATCGTTCAATATCGGTCGCCGGCAAAAGGGGCCTTAGAGATTTTGTACGACTACTTTAAAATCCGGGCAGAACGCAATAATATCAACCATGCCAACGCCGAAGACACGATGTCGACGCGGGAAGTCAAAAACTTGGTATTAGACCTGCTGCAGAGAATAGAGAGTCAACAGTAACCTACTATAAAGCGAGAATCTATCCGCTTCAAGAGAGTTTGACCAATTGACAAGATAAGTCAAAAAAGATATACTAAATATAAATAAGGGTAATACGTTAGCCCAAAGAAAACCTATTTCAGGGTCAAAAACCCGGTAGGTTTGAAAATTTCAAAAAGGGCTAAAAATGGCGTAACTAAGGGAAAAAACGACACTGTCCGATTTTGGTTTTGAACCCGGGTCCCCGAAAAAGGCAAAAAAAGCCCGAGGTTTGAAAAAATCGCCTGTGGGCCCGCTCCCAGAGCGGGTACTGAGGGACAGA # Right flank : GATAAGTGAAAACTTGTCCTGATTTTTTTATATTTTTTTTGCCTGATGGAGGTGGTGCTGTCCATGCGGTATCTTATTTGCTATGATATTGCGGATACGAAACTTCGTACCAAGGTCGCTAAGTATTTAGAAGGCTTTGCTTTTCGTATCCAGTACAGTGTCTTTATGTGTGAAAACACGGAAAAGGGCATGGCGGAAGTCTATAAGCGCCTCATTGTTTTGACGCACGATGCTTCAAAGAAAGCGATTCTTATCGTTCCCCTGTGTCGGAGCTGCGAAAGCAAGATGAAGACCCTTGGCACGGCCATTGAAAGTGAAACGTATTGTATCATTGCCTGAAAGAAGGGATGTCATGAGTGTTCTCTACTTGCTCTCGACCGGCAGTTACTTGCGGAAAATCAAAGACCGCCTACTCATCGGCAGGGCTGATGGAAGTCATAAGAGTCTACCTATTCAAAACGTCGAGCAAATCGTCCTCAATAAGGGCGGCAAGATTACAC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATTACCCATTTCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 77726-77319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCOC010000007.1 Megasphaera massiliensis strain DFI.1.8 LFDCGANH_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 77725 36 100.0 38 .................................... GACGGCAAATAAAACTGCTAAAACCAAAACAAAAATAA 77651 36 100.0 39 .................................... TCGCCGAACTTCACGACGATACATAATTCCGGATACGAT 77576 36 100.0 37 .................................... ACTCCTCCAATCAGTCAGTCGAGATATAAAAAGACAA 77503 36 100.0 40 .................................... GCGCCGTAGCCGGCTTCGTTGTTAAGCAGGATCGTAGATC 77427 36 100.0 37 .................................... GAGTCTCCATGAAAATGGACACAGCCTCGTTCGTTGA 77354 36 91.7 0 ..............A.............G.....C. | ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 98.6 38 GTCGTATTACCCAATTCCCCGTAAGGGGACTGAAAC # Left flank : ACCTGGTGGAACGCTTGCAATTATTTTTAAAAGAGGCCAATGAGGAAACGGTGGCTCAACTCCCACCCCATAGAACATAAAAACGATGAGTATCTTTTTTTGCCGCCGTGAGATCCTCGCGATCCATATCTCACCGTAGAATGGAAAACATAAAATCCCTGAGAAAGGCGATGATAAGCAAATCTCAGGGATTTCTTTATGTCGTTGCGGAAGGCCATCATGCATCGACGTCAGAGTTTGACCAATTGACAAGATAAGTCAAAAAAAGTATACTGATTATAAATAAGGGTAATACGTTAGCCTGTGGAAAACCTATTTCAGGGTCAAAAACCCGGTAGGTTTGAAAATTTCAAAAAGGGCTAAAAATGGCGTAACTAAGGGAAAAAACGACACTGTCCGATTTTGGTTTTGAACCCGGGTCCCCGAAAAAGGCGAAAAAAGCCCGAGGTTTGAAAAAATCGTCTGTGGGCCCGCTCCCAGAGCGGGTACTGGAAGACAGA # Right flank : GGGAAGAATCTGAACCGGTCTCACTCGGACATTTCAATCAGAGACACGCAAAAGCACCGCCGCAGTCGAAACTGCGACGGTGTTTTTTATACCCTAATATAAAGAGCAACGCCCTTGAATCGGAATACCGGGTCAAGGGCGTTGTTGTAACAGTGAGAAATCCTATACATTTATGCAGACGACAGAAAGGATTTGAAATTCTTGAAAGAGTTGCCGATGAAAATACATTATTTGGCAGGATTCTGTGACAATCGTGTAGAAAATATAACGTATAGAAGTATTTGTTCCGTAAAAAACAACATAGATATTGAAAGGAGATTGAATATGTCGGAATTGTCAACCTTATTAGCGAATCAGCAAGGCCTGCTGGAGAGGTTGAAGGTTTTGGATGGTGTCGGAGCAGGACGGAAAAAAGATGAAATTGCAGCTGTGAAGAATGAACTTCAGGCCATGACCGCTGAAGCGGATCGGTTATATAGTGACAGCCGTGACAGACTTTT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATTACCCAATTCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 2571-5182 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCOC010000028.1 Megasphaera massiliensis strain DFI.1.8 LFDCGANH_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2571 32 100.0 35 ................................ TTTATGACGACGTATGGAACGACCGAGAAGACCCA 2638 32 100.0 34 ................................ GTGCCGATGATCGAGGGGCGTTCTTCTGTCGGGC 2704 32 100.0 34 ................................ GTAGCAACTCCGTATCATGTTTCTATGGTATAAT 2770 32 100.0 33 ................................ GAAGGCGGCGATAGGAGACTGCAAAGCCTTAAC 2835 32 100.0 35 ................................ ATATCCGAGGCCGAGCATATGAAGGCCCAGAACGA 2902 32 100.0 34 ................................ ATCAACCGCGGCGACCAACTGCCGCGCATCTTTA 2968 32 100.0 35 ................................ AACAATGCGCGACGTCTGGCAGAAACCGAAACTGC 3035 32 100.0 35 ................................ TCGTTATCGGCATGACAGTTTATATGTCAAAAGAG 3102 32 100.0 36 ................................ GTTTTTTCCGAACACGGTCGCCGATCAGAGCGTCGA 3170 32 100.0 34 ................................ GCCCATGTCAACCAACTCCCGGACGATATTACTC 3236 32 100.0 34 ................................ TAGTATGATTTCATCCGATGGTATCCTAATCATA 3302 32 100.0 34 ................................ GACGCGGGCAGTTACAAGGCTATCAATTTGAGCG 3368 32 100.0 33 ................................ GAATGATATCTTGTTTGATCGATTACGCCGGCT 3433 32 100.0 35 ................................ AAAATTACCCGGTTTGCCCTCTAACTCTAAAGCAA 3500 32 100.0 35 ................................ GAGTATGTTGCCATATACTGCTGGAAACGGATGTA 3567 32 100.0 34 ................................ ATGTTTGACTGGGCGAAGTCGCTTAACTGGACGA 3633 32 100.0 34 ................................ TATTATCCTCCTATTCGACTTTTATACCATACCC 3699 32 100.0 33 ................................ TTCGGTGGACCCGTCCGGGGCAAAACAAGCCGA 3764 32 100.0 34 ................................ GATTTGGTTGAAATAATACGCAATTTAGGAGATA 3830 32 100.0 34 ................................ GTTGCTGGATGCAATCAGCCAATACAATGCCTTG 3896 32 100.0 34 ................................ TTTTCGGATCATACGTTAATACGTTAGACATTAA 3962 32 100.0 34 ................................ CTCGATCAAGTACAGCGGACTTGCGATAATCATC 4028 32 96.9 35 .............T.................. GGTTATATAGGCCTCGATCATTTGTTTTTGCTCAA 4095 32 96.9 34 .............T.................. ATATAATCGCATGTAAGGAGATGTGTATATATGA 4161 32 96.9 33 .............T.................. ATCGTATTCACCCAGGACATAACGGCGCTGGTA 4226 32 96.9 34 .............T.................. GTGCTGGCGGTATCCGTGACAGACGGCGCGTTGG 4292 32 96.9 34 .............T.................. AACTTCGCTGGAAGAAACGTATGCTGTCCCGTTT 4358 32 96.9 34 .............T.................. GCGACTATATTACAAACGGCCATTGCTCATAGAG 4424 32 96.9 34 .............T.................. AGTACGCGGATTGTCGGACTTCATCATAGCGATC 4490 32 96.9 34 .............T.................. TTGGATATCCTTACACGTGCTTGATTGTTATAAC 4556 32 96.9 33 .............T.................. AACTTAGGGTTGACTAAATAACATGGGTGCCGT 4621 32 96.9 35 .............T.................. GTTTATATGTCGGATGCGGTTGACAGCCTTGCGTC 4688 32 96.9 34 .............T.................. AGCGTCCCAGCAAGGGTTATGCAGCGTATACAAG 4754 32 96.9 35 .............T.................. GGAAGGCAGCGCACGGTATAAACAAGTAAATCAAG 4821 32 100.0 32 ................................ TCTTCAAAAATTAAAGCCCCGGAAATGGTCAA 4885 32 96.9 35 ..................A............. GGGAAATTACGCGGCATTATCAAGTGGAAATCAAC 4952 32 93.8 34 ............................T..T GGAACCTACAATCCGCCTCGGTCGAAGAATAACT 5018 32 90.6 34 ..........CA.T.................. GAAAAAGGCCCAATGAAACCGTTTTCGAATGTCA 5084 32 96.9 34 .............T.................. CACGCCGACACAGTTAACTACTGTTGCGCTCGTA 5150 31 81.2 0 .....-....A........AA....C..T... | C,A [5160,5166] ========== ====== ====== ====== ================================ ==================================== ================== 40 32 98.1 34 GTCGCACCCTTCACGGGTGCGTGGATTGAAAC # Left flank : AGTTTATATAGCCTTGAGATGAGACTCTATTTTCAGTGGGTAAGGTGTCAACCATAGGAAGGTGAAGCAGATGAAGAAGATGAAAATAAGTCGGATTATCGGTTTTGGTTTTGGATTTATGCTCCCGAAGATATTAAAACCGGCGATAAAAATTGCCGTGATTTTGGGAATTGGGTATTTAAGCACGAGAGGTTATAAGCAACAAAAAGAGCAACTTGAGATGAATAATGAGTGAGATCTTGAATAAGAAGTCGACGGATTCCAGGCTGACTGACTAATGGAATACCCTATAAAATTTATGGTGGAGTCACAAAAACGCGCCAGGGTAAAAGTAAGGATCGGAAGTGCGAAGAGATAGTGAACATCTTCTTCGCTGCCAAAATACTTGATTGAAATATAAAAATTTTGATCAAATCCCTAAAGTAGTAAGAAGAAAGTGTATAAGTGGGGCCATATCCCCATCGATACACGCAAAAGAGACTGTAAAAAGTCCTTTTGCT # Right flank : CAAGGCGCAAAAATGCCCTCTCTACATCGGTAGGGAGGGCATTTCTATTGTCGTATTAGTCCTTGAAGTAAGGCTTGAATACGGAACGGTTCGGTTCTTTATGTTGTTTTTTTTCGGAGCGTTGGTTGTTGCGGAAGGTGCCGTGGTTGTTGGAATCGCGGTTTTTCGGTGCGAAGTGACGACGGCGTTCGCCTCGTTCTTGACCATCTTCTTTACCGTTGCGGCGATCTTTCCGATTGCGGTCGTTACGGCGATAGTTGCGGTCGCGGTTATTTTTGCCTTGGCGGCTGCGATGGACGCGGAGCGGGGCTTCTTCAGTAATCTTGACGGGCGTCGTGTCCGGTTCTTTGGTGAGCAGCTTGATAGCGGCTGCGATGAGGGACGCCGAGTCGTAGTTAGCCAGGAGTTCTTCGGCATTTTCTTTGTAGCTTCCGAAGTTACCTTCTTCTGCAGCAGCGGCGAGGTTGCGGATAGCGGCCTGCTGTGCGCCTTCTAAGGCT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAC # Alternate repeat : GTCGCACCCTTCATGGGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7301-8861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCOC010000031.1 Megasphaera massiliensis strain DFI.1.8 LFDCGANH_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 7301 31 100.0 35 ............................... GAATGGCACGATGCAAGAACGAACACACCTACGTG 7367 31 100.0 36 ............................... AGATTCCAGCCGAACCCGCTTCAGACGACGAAGGAG 7434 31 100.0 37 ............................... TAATGACGCCATAAGGATATACCCAATCGGCCCCCAG 7502 31 100.0 35 ............................... GTTGCGCTGCCGATGGGCAGCGATTACAATACCGG 7568 31 100.0 35 ............................... AGTTATATCGTTTAAATCGGTGCCCGCATCAATAG 7634 31 100.0 35 ............................... ATTTCGTCGCTCGTGTCTGAAACGTTGAATGCGAG 7700 31 100.0 35 ............................... GGCGATAAACTTACAGCATTACATAATAACGTTTG 7766 31 100.0 36 ............................... GTGGTATGCTAATAGTTAAAAACGGAGTGATTATAG 7833 31 100.0 35 ............................... ATACTCCCAATGGGCTTTTTCGACCAGCACCCGCG 7899 31 100.0 37 ............................... ATTCCATATAACATTATCGCCTGCTTTGATGGCAACG 7967 31 100.0 35 ............................... AGTGAGATGTTTTTGATTGGGATTCGTTTTGTCCG 8033 31 100.0 37 ............................... GCCATGCGATCCCTGTTGCTGGACCGTATAAGACGAG 8101 31 100.0 35 ............................... ATATGCATCACGCAGTTCCGCATCGCTCTCCAGCG 8167 31 100.0 36 ............................... AAAAAAGGGAATAAACCACACAATACGCGCCCGGTG 8234 31 100.0 37 ............................... ATCGACACTCGCAACATCTGCCGAAGCTTGGCCAAAG 8302 31 100.0 36 ............................... GAATCGACCTTTCCGCGAAAAAATATGATCCCATCG 8369 31 100.0 36 ............................... CAACAGTATGATTAATTCTATCGGTAGGTGGTCCGG 8436 31 100.0 35 ............................... GTTAATAGTATTGTGCTTATTGTTAGGAGATGGTG 8502 31 100.0 36 ............................... ATTGGCAACGTGGAAATTATAATTGAATTCTGGGTG 8569 31 100.0 35 ............................... GACAGCGACATGGGGCTTGACCTACTGGGAAGATG 8635 31 100.0 35 ............................... TCAGTATCACTATATTCAGTTTCACTATACTCAGG 8701 31 100.0 35 ............................... CAGTTTCCGTAAAATCCGGCAGCTGAAGTGATTCG 8767 31 90.3 34 .......................C..TG... CAGTGCGCCCACACTGCCGTTATAGCTACAAACG 8832 30 74.2 0 .T.......-.TT...C......T...GG.. | ========== ====== ====== ====== =============================== ===================================== ================== 24 31 98.5 36 TCGCACCCCGTGAGGGTGCGTGGATTGAAAC # Left flank : CGACCCGAAGGCAGCATTGAAATGACGAAATTCTATTGGGTCCGCCATGACAATAAAACGGGCAACGCCTCGTCAGCTCGCGTCCATCACAGCATCACGACCAGCTTAAAAGAAGGCGTCACGTCACCGCATATCTTTGACGACTACGTCATCGACGACAGCGCTTTGAAAAATATCGAAGGCCTCAGTATTGAAATCTACCAAGAAGGCGAAAAAATACAGTAAATAACTACTTATAAGGGTAGTCAGATTTTGGATTTGTTCGACTAATATGATGTCATATGGATACGATATATGTCGAAAGTCATGAATTGAAACCTGTGTAAAAACAGCTTTATGTAGTGCGAAGGTATAGTGAACATCATATTAGTCGTCAGAATCCTTAAGCAAAATATAAAAAATTTGATGAAATCCCTAAATTTAGTAAGAATAAACCGTATCTGTGGGAATATATTCCCATAGGTACAAGCAAAAGTGACTGCAAAAAAGCCCTTTTGCTG # Right flank : CTTGGTGCCGAGGGAGGGACTTGAACCTTCACTGTGAGTGCGTAGCGTGAAACGACATACTAAAAACAGAATGGACGAGAGCGAGAAAAACTCACTCACGTCCATTCTGTTTTGTTGCAATGATTAGAATAGCTCACTGTGACTCCCGGTTCGGGTCAAGGTTAATATCAGGATATCCTCTTCTACCTTGTAGATCAGCAGCCAATCAGGCAAAATGTGGCACTCACGGAAGTCGGCATAGTTGCCGGATAAGGCATGGTCACGATACTTCTCTGGGAGTGGTTGCTCTTGGACGAGATAGTCAAGCACTTCCTGCAACAGCTCCGGTGTATGCCCGGGTTGCTTTAACACGCGCTTGTAATCCTTTCGGAACTGTTTGCGGAAGCGGATTTTAAGCATTTAGTGCCTCCATGGCATCTTTAACCGAATCATAGGTTTTGCTGAGATTGCGATGATGATTTACGTCGTCAATGGCTCTCAGGGTCTCAAGTTCATTGGGG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGAGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.40,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 9931-10685 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCOC010000031.1 Megasphaera massiliensis strain DFI.1.8 LFDCGANH_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 9931 31 84.8 33 ......-......-T................GA TATTTCATCTACTTCAAATTCTTCGATGGGTAA 9995 31 84.8 34 ...AT....-...-T.................. GTCTATGATTACGATATTTGCGTAGACGATAAGA 10060 32 93.9 34 ..............-.....T............ GACGGCGTGCCTACCAGCGGCAGTAATAATCCTG C [10066] 10127 33 100.0 33 ................................. ATACCACGTTACCTCGAAACTATCTAGGTACAT 10193 33 97.0 34 ...............A................. TCCGTCGTAAAGAAAAACAACGACAAAGAAGTCC 10260 33 100.0 34 ................................. TGGGGAATAATTAACAGCTCGTATGTAATCGTAG 10327 33 93.9 33 ...A.............A............... CTGTACGTTAATCATTTCGGTCCCTCACCACAT 10393 32 90.9 33 ...........C.-T.................. TGTCGCCATCGTGTCCTCCTACTTCAAAAAAGA 10458 32 87.9 34 .........-..CAT.................. GTTTTGGAAAGTATCCGGAGACCGCCGGAATCTG 10524 32 87.9 33 ....T......C.-T.................. CGATCATTTCGATGGGTCCGCGGTGTAGTGTAT 10589 31 93.9 34 ...........--.................... GAGGTGGAAATCAGCCTTTCGACCGCATCCCATT 10654 32 84.8 0 ...........C.-T......A..A........ | ========== ====== ====== ====== ================================= ================================== ================== 12 33 91.6 34 GTCGCACCCTTTGCGGGGTGCGTGGATTGAAAC # Left flank : ATGTCGGGATACCTAAATCAGCAAAAATCGTTTCTGCCTGACGCTTCAAATCGGCGTCGACACGGAGATTTAATGTTTTTGTTTCAGCCATGTGAATCAGCTCCTTTCACAACCATTATAAAGATAGATGAGGAAAATGTAAAGTAATTAACGTTACGTTGTAGTGATGATAGTGGTGAAAACTATTTTCCTTATTTATGTTTGTTGGGGGAAGGCTTTTCTGCCTTTTGAGGTTGATTGTATAAAAATGTCGCCTAAATAAAAAAAGTCCCCTAAATAAAATAGTCCCCGGATCCGGCACATTTCCTATAACGGGACGGCTTACTACCAGGGACGCTATTAACGATGCTGCTGTATTATATGGATTTAAAAGGGAAATGTCAATACACAGGGATGGAATCGTTAACAGCTTTATAGATGGAGGAAGGAAAGTTATTTATGCCATTATGGTTTGAAATGGTGATATAATAAAAGTAAAGAATGTAAAACGTCCTTTTGTT # Right flank : CGCGCCAGACTTAGGATCTGGCGTCTTATTTGTAGTCGCATTATAAAGAGGGCCTGCATTAAATCTTATCTTGCAACGGCGCTTTTTTTCTTATTTTTCAACTTTTCTTCTCGTTCCGCCTTTCGTTGACAGTCATCTGTTTCTCATGCTATAGTAAGAACGATATAATATAAGTAATAGGTCAGGTGTCACAGACTTAATAGAGAAGCCGGTTCAACGCCGGCGCGGTCCCGCCGCTGTAAGGTGGAGCCAGGCTGCAAGGATGTCACTGTACTTTTGTATGGGAAGGCGCAGCTTTGGCCATGAAACCAAGCCAGAAGAACTGCCTGACGGATAATCACCGATAGACCTGCGAGCGATGGGAAGGAGATTGTACGGAGCATATTCGGGGACTGTCGTCTATACGACGGTCCCTTTATCTTTGTATGTCCTTCTCCCGCAGGTGTGCTACAGGAAGGGGATAATACTTACGATGGAAGCAATCATTCACGGTTTTCAGT # Questionable array : NO Score: 8.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.58, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 16083-16414 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCOC010000032.1 Megasphaera massiliensis strain DFI.1.8 LFDCGANH_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 16083 36 100.0 40 .................................... CAGCCATCCAGTTAGCATAGCGGGAAGCTTTTTTAGCGAG 16159 36 100.0 38 .................................... TGTCTCGTTAAACCACTGTCCATATTTTTTAATATTTT 16233 36 100.0 36 .................................... CCGAGTCCGCGTCATGAAGAACCATGCGCAACTGGT 16305 36 97.2 38 .................................A.. GCCGTACTGGATTTATTGTGGGCAAGCTGACCTTGTTC 16379 36 91.7 0 ...........C......T..............A.. | ========== ====== ====== ====== ==================================== ======================================== ================== 5 36 97.8 38 GTCGCATTACCAAATTCCCCGTAAGGGGACTGAGAC # Left flank : GGCCCTTACCGGCGACGTCCTGCACCTCCCAAACTTCGTCGGCATCGCCCTCATTATTGGATCCCAGTGGCTCATCGGAAAATGCCGACACCAACCATAATACCTTCAGACATAAATCGCGTCTCATCGTGGAAAATACTTAAGAACCTTAACCCCGAAGTGGCTGTGGCTACTATCGGGGAGTGTTTTTGCTTATGAGTTTATCTTTGGTAGAGACGTCTGTTTGACCTATGCGATGGCGGTTGTTTGACAGCGCTAAAGGAAAAACGTATACTAAAGAAAAGTCAAAGTAATGCGACGGCTTTGGAAAACCGATTTTAGGGGCAAAAACCCCGTAGGTTTGAAAATTTCCAAAAGCCTTACAAACGGCATGGTTGTGCGACGAAAACTCGATTTCAATTTTGAGTTTTAACCCAGGTCCCCGAAAAAGGCGAAAAAAGCCCGAGGTTTGAAAAAATCGCCTGTGGGCCCGCTCCCAGAGCGGGTACTGGGAGACAGAG # Right flank : CTTGTTGTTATTCAGTAATACCAGAACGCCGGTTTTCTTGTCGCATTACCCATTTCCCCCGGGTTTAATATGCTCCTTTTCAAAAAAGAGGTAATCAATAGGGGGACGGAAAGTCCGAAGGCTTTTGTTTCTAGAATAAGGAATGAAAAAAAGTCGATACAGGCATCCATTTGTGATGTCTTGTATCGACTTTTTGTTGTCTATGAGAGCTATAAGCGGGACGTAGGACGAGGTTTATATCCTTTATGGGGTGGAAGAAGGGCGATAATACGGGACTTTAAAGATAAAACGAATCTTTGAGAAATGGCTTTCTAAGGCGGTGTACCGGCTTTTGTGAGGCGCTTTTTTAGGCAGGTGTAACGCGTTACCTTATAAGAAGAGAAGAAAAGAAGAGAATAGAAATAGAAAAGACAAGATATAAAAAAGATAAGACATAGAAAATATAAAGAGATAAGAGTATAAGTAGATATAATATTTTTTTGTTTTTAAATTCATGATTT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTACCAAATTCCCCGTAAGGGGACTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //