Array 1 4026-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWIM01000059.1 Mesotoga sp. B105.6.4 B10564_c42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4025 30 100.0 36 .............................. AACCTCCCGACTCGCAAGTGAAGAACTCCGAGACCT 3959 30 100.0 36 .............................. GCTTGCTCCTTCTTTCTATTTCGGAATCGAGAACGG 3893 30 100.0 35 .............................. AATGCCCCATATGTCGTGCCCACAACGATCACGAT 3828 30 100.0 36 .............................. GTAGAGCCTTCGCACTCACATTCAATCTCTTCGGCC 3762 30 100.0 36 .............................. ACAAGAACGTCACGAAGCTGGTTATCGAGGGGAAGC 3696 30 100.0 35 .............................. AAGATAGAATTTTGAACAGTCGTCGCAAACAGTTA 3631 30 100.0 37 .............................. AGTTTCTGGAGGTGGCCACATGAGCTTTCAGGTCAAA 3564 30 100.0 35 .............................. TGAGTATCCGCCCATTGCATGGTTACCCAGCCGAT 3499 30 100.0 35 .............................. AGCAGGTCTTTCAGACGTACCCACAGGCTACTATG 3434 30 100.0 37 .............................. TAGTCGCCCACGGCTTCTTGAGAGAGTAAATAGGATG 3367 30 100.0 36 .............................. GACATACAAAAGTACTACCCGAGCATACCCCACAGC 3301 30 100.0 38 .............................. TAGAGTATCCTGAAGCCATTCAAGATAGACAGAGGCGG 3233 30 100.0 37 .............................. AAGGTTTCTCTGATTCGGTTGAGAAAAACGGATCCAT 3166 30 100.0 36 .............................. TTCCTTAGGTTTTTTTTCTTCCAATTCGGCAATTCT 3100 30 100.0 38 .............................. AGCTTTGAGACTGTGATCGTGCCTTCCGTTGAAGTTGA 3032 30 100.0 37 .............................. TGGACTTGGTCTCATGAATGACTCTTGCGCATAGCTT 2965 30 100.0 36 .............................. TCTCGAATCGGTTTGAAGAGATTTGCCACAGTCACG 2899 30 100.0 36 .............................. TTCTGGACCTTCATCTGACTCTTCACAATAATCTCG 2833 30 100.0 35 .............................. GCGGGCAAAAAATCCAGTTCTTTAATGTCACTCGC 2768 30 100.0 34 .............................. CTGTTGGTATTCGACATTCAAAACAGGCAATCAA 2704 30 100.0 37 .............................. TTTCTTTACAGCAGGACATAAGCGAATACTAACGAAA 2637 30 100.0 35 .............................. ACGTCACCGAACGCCTTCTTTGTATTCTCTCCAAA 2572 30 100.0 38 .............................. ACGAACAGTATCGCGGAGTCATCGAGGGCCTGAAGAAT 2504 30 100.0 37 .............................. TAGGAGTATTGCTGCATCTCAGCAAGCAAGTTTGAGC 2437 30 100.0 36 .............................. ATCTGTTTCCATGCCATCTTTGCGAGCTTCTCCGGA 2371 30 100.0 37 .............................. TTACGTTTTGGCTCTCAGAGCCAAACAGCACTTACGA 2304 30 100.0 36 .............................. CGGTATTTCATCTCATCACCACATTCCCATTTCATC 2238 30 100.0 37 .............................. TCAACAACTCTTTCTCGATGAACCCTGTCAGCAAACG 2171 30 100.0 38 .............................. GTGTCATATCCGGAGCTTCTAATATCCGCTGAACTCCC 2103 30 100.0 38 .............................. CGATCTCCAGCCACTGCTCAGTCTTGATGGCCGGATGG 2035 30 100.0 36 .............................. AGAGGAGCGAATGGGATAAACTGAAACGCATAGCGA 1969 30 100.0 35 .............................. AAGGATCAGGACGAAAACTACTATCTGATATATGC 1904 30 100.0 38 .............................. ATGACATCATCTGAATAATTGTGCATATACCACGTGCC 1836 30 100.0 39 .............................. CTCATGGATATGGAGGCGGGCGCACGAAAGGTGCAAAAG 1767 30 100.0 39 .............................. CTCACTAAAATGGATGACGTTCAAAAAGACGTTGACGCG 1698 30 100.0 35 .............................. TATAATTGCTTTTCCAATAATCTCAACTATTTGCG 1633 30 100.0 37 .............................. ACCGAATCAGGGTGTACGCTACGGTTACTATGGCAAT 1566 30 100.0 36 .............................. ATATACTTTTGCTGATCTCTTCTTACTCTATTCAGG 1500 30 100.0 34 .............................. TTGAATAAGATCGAGAGGATTGCAAGGGTTTGCT 1436 30 100.0 38 .............................. AAAGCACCGTTATAACCATGCAGCTCGCACGTGTCTGC 1368 30 100.0 35 .............................. TTAGCTCTCTTTTCCTCTATTTCTGCGCGCAGTTG 1303 30 100.0 39 .............................. TTGCAACACCTGAGAACATTGGTATGAGGCCTGAAACTG 1234 30 100.0 37 .............................. TTTGAAAGACTGTTTATCTCGATTCCTGTGGATTGGA 1167 30 100.0 38 .............................. TAATCTCGTACCTTCGGAAGCTTCTCACCAACGACCTG 1099 30 100.0 36 .............................. ATTCGACCGTCTCCTTAACACCCTTCTTCGACCAGA 1033 30 100.0 35 .............................. CAGCCAATCCGCTTCTGTCTTTCAGCAAACCTACA 968 30 100.0 36 .............................. AACAGACTTACGAGTTAGTAGAGGAGGGATGAGAAA 902 30 100.0 38 .............................. TTTTTATACATTCACGAGGAAATATCTGAATAATGATG 834 30 100.0 38 .............................. TTAGTGATGGCTCGCCTGTATATCTCATCTATCACGTA 766 30 100.0 35 .............................. CACTTCCAGGAGCGGACAGAATGTTGATAGCAACT 701 30 100.0 35 .............................. AGTAGCAGAAGCGGCCGTTGTAACTCCTATTTCAT 636 30 100.0 36 .............................. TATTCTGTCATCAGCACTATCATTCGGGTAACGAGA 570 30 100.0 36 .............................. AAATTAAAGATGCAACGGCTAATCAAGAAAATTGGA 504 30 100.0 36 .............................. TAACCGCAGGGCTCTTGAGAGCATTCGCTATTGTTT 438 30 100.0 37 .............................. CATATCTTATCGACATCTACGACATCGCTTCCTAGTT 371 30 100.0 36 .............................. CGTGGATAGACGAGTGAGAGGAGTGGGAAAATGCTA 305 30 100.0 35 .............................. TTTTCAGAACCTATGAGATCTTTTTCGAGATCCAT 240 30 100.0 35 .............................. ACCTTGATTCCAGAAGCGCGCTTCTCTATGTCGAG 175 30 100.0 36 .............................. AGCTTATGAAGGCTCAGACCGAGGCTAGAATTGCCG 109 30 100.0 38 .............................. AGAAAGAAATCGAAAAGGAGGTAATAGAAAATGATATT 41 30 93.3 0 .........A......A............. | ========== ====== ====== ====== ============================== ======================================= ================== 61 30 99.9 36 GCTTTCAGACTACCTATGAGGAATTGAAAC # Left flank : ATGTACAAGATAGAAAAGCACATAACAGGAGAGAAAGAGTATGGCCCGTGGAAAGGCTGAAAGATGTACGTGCTTCTAGTTTATGATATCGGCGAAAAACGCGTAAATAAAGTGCTGAAAATATGCAGGCAGTACCTGGACTGGGTTCAGAATTCCGTATTTGAGGGAGAGCTAACAAAGGCAGGCCTCGAAACACTCAAGAAACGACTGGGGAAAATCATGAACAAAGAAGAGGATTCGGTGAGAATCTACAAACTAAGGTCAGAAGACTACTTGACTCTCGAAATACTCGGAATAGATAAGAAACAAGTAGCTGATGACGGAATCCTTTAGCTCCGTCGACCCCTGATGAATTGAAAACACCAGGGGATCGACAGAAGCGGTCTAATTTAGCTCTTCGTTTCTTTATGCATTTCGTGAGAGAACGGTCTTTGAAAAACAGGCAAGAACCAATGTTGCCTCAAAACGCTGAAAATCCTATATAATCTATATAGTAATGG # Right flank : CAAGTAATTACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTCAGACTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 99839-100203 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWIM01000073.1 Mesotoga sp. B105.6.4 B10564_c4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 99839 30 100.0 37 .............................. AAGAGATACGGAGATACATATGTATCGCTCTCTCTGA 99906 30 100.0 37 .............................. GTACCGGGTTTACAATGGCGCCCTGACCGGCGAATTC 99973 30 100.0 37 .............................. ATGGCTTCGGCCAACATTTGCGCTGCACGCCGGGGGT 100040 30 100.0 38 .............................. TTTCTCCATATTCCGGACATCTTGCGGCGACCTTAATT 100108 30 100.0 36 .............................. TTGTCTGATGGAGTTTTGAGATGTCTCCGCCCTCTT 100174 30 90.0 0 .........................CT..G | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 98.3 37 GTTGCGTGAGAACCATAGTGGTATGGAAAC # Left flank : AGAGGGTGTCGAGATCCCGCTTTCAAGGGTACTTGAGAATTTCACGTTCAGACTTCTGGAAAGATGCGGTCACATGCCCTGGATGGAAAGACATGCCGGAAAAGAGTTCTACAGGATTGTAGAAGAAGAACTTGAGAAAAGATAATCTCTCTCGGCATCTGGATATGCAGAGGCTTGAATTGACAAAAAACACCGATTACTTCAGGAAGATCTCAAAGAGATGAATCAAAACACCAAACTAGCTTGTGGAGCGCAAGGTTCATGAACAGCTTCATGTAATCATTCTGAATCCAAGCGCAAACGGAATTCAACAATCCTCTTCGCCAAAGCATAAATCGGAGTCTGACCCTATTTAATGACCCAATCAACAATCAATGAGTTCATCTCAAATGAAGTTCAAGAAAATCGATGAAAGTCAAATTCGATGTTGCTTTGAAGATCTTTCCATTTATTTGATTCTGTCGTCCAAAAACCTGTATAATATCTTTGTAATAGAAGCG # Right flank : GAGCCGTGGCTGGTGGTACGTGGTAGGTGGTTGGTAAGTGCTTATAAACAAACAAGAGCACAATCACGACTAGAATAATTTCAGGAAAACCATCCGGGGACGCATGGCTGGCTTCGCCAGGAAGGAAAACCTTTCTAGGGGCAGGACGTTATGTTGTATGAACTAACTCAACTGGTCATCCTGACGCGCTCTTGGTCAGGATCTGGTCTTTGATCTTATCGGAGGACGGGTCCTTGCTCTTGGACGGTCAACGGAGGACGGCTCTTATATGAACCATAGTGGTATGCTAAGAGCCGTGGCTGGTGGTACGTGGTAGGTGGTTGGTAAGTGCTTATAAACAAACAAGAGCACAATCACGACTAGAATAATTTCAGGAAAACCATCCGGGGACGCATGGCTGGCTTCGCCAGGAGGGAGAAGCTTTCTAGGGGCAGGACGTTATGTTGTATGAAACAACTCAACTGGTCATCCTGACGTGCTCTTGGTCAGGATCTGGTCTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGTGAGAACCATAGTGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 54-807 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWIM01000104.1 Mesotoga sp. B105.6.4 B10564_c84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 54 30 96.7 35 ....T......................... ACCTTGATTCCAGAAGCGCGCTTCTCTATGTCGAG 119 30 96.7 37 ....T......................... TCGAGGCGCAAGTAAAGAAAACCGTTGAAGAACGCGC 186 30 100.0 34 .............................. GAAAATAGGCTAATCCTTGCATTTTAATAATCCT 250 30 100.0 34 .............................. CTTCTTGGCAGTTTTGAAAATGTGGTTCTGTGGT 314 30 100.0 38 .............................. ATAGGTACAGGATTTTCTCCCGGTTTCCGAAATATTAC 382 30 100.0 37 .............................. TTGGTTTGAAGGATTTTAGAGGCGATGTTATTCGTGC 449 30 100.0 37 .............................. CTCCAGAAGAAATCGAAGCTCAAAGAAAGGCATTCGA 516 30 100.0 35 .............................. TAGCTCTGTTGAGCAAGAACCCTGGAACTGCGATA 581 30 100.0 36 .............................. GAAGAGCGAAAGAAAGACTTGCAGACTTTGAGAAGG 647 30 96.7 35 ...C.......................... CATAAAATTCGATATTCCCACGTGGTACGGAACGA 712 30 96.7 36 ...C.......................... TAGACACGGAAACACGAGCCAAACGGCGCGATGTAA 778 30 96.7 0 ...C.......................... | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 98.6 36 GCTTCCAGACTACCTATGAGGAATTGAAAC # Left flank : CCTATGAGGAATTGAAACTTTTCAGAACCTATGAGATCTTTTTCGAGATCCATG # Right flank : CTTGAGAGAGAGTTCAATGAACTGGTCTAGGACTGCAGCTTGGGACATTTTACAAACTAGAGACATATTGGTTCAGTAGTATACGGAAAAGGATCAAATAGATATCACTAAAAGAGCAGGAAGGCATTCTCATCCTTCCTACCCTCGGGGTGTGTGAGTAGTGCAGTTGCAAGTTACAAGTTCTGAGTTGCAAGAATAAAAGCCGCTGTACGCTTAAAAGCAGGGAACCCGCTGATCGCTGGAAAGACCGCTGTACTCTTAGAACCCGCCTAACGATAAAGGACCGGCTACCTGGATATTGATTCCTTCTCTTCTTTCATCAGAATCGCTCTTTTCCAGTCGAAGCGAAGGACTGTCTCGCGGTTCACGGCCTCTTCCCTGTCTCTTGAGACAATGACCCGCAGCTGTTCTTTGGGAGCGCTGTCGTCGTAGAAACGCTCGTGATGAAGCATGATTATCGTATCCGCGCAAGCGTTTATCTCTTCAGCGTCATGAAAGTC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCCAGACTACCTATGAGGAATTGAAAC # Alternate repeat : GCTCCCAGACTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 962-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWIM01000114.1 Mesotoga sp. B105.6.4 B10564_c102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 961 30 100.0 38 .............................. GTTAGGTACACTACTATACTATACTACTAAGTACACGT 893 30 100.0 35 .............................. GTGAGTCAGAGTTGGCTACAAGTCTAGAAATTAGG 828 30 100.0 36 .............................. CTTGCTACTTAGACTCACGCGCATTTCTAATGGTCA 762 30 100.0 36 .............................. TGTTATCGATGGAATCTCGTTCTCTTCTCATCCATA 696 30 100.0 36 .............................. TAGTATCCTAAAGTGAAGGCGGTGTGTAAGTATGAG 630 30 100.0 35 .............................. TTAATGAGTCGGAGCTAGCTACAGACCTTGAAATT 565 30 100.0 36 .............................. CGCTACCGATCCCGACTATGCGAAGAAGCTGACAAG 499 30 100.0 38 .............................. TTGCCTTTTTCTCTGTTAATGTAACCATGTTCTATCCC 431 30 100.0 37 .............................. CCCCGATTTTGAAATTTCCCCCAACATTCAGGGAAAT 364 30 100.0 35 .............................. TTCGAAATGTATCGAAAAATGATATTAATCGAGGG 299 30 100.0 36 .............................. CAAAAGAGATCTCTTTTTTTTGCGCTCTTATCCTGG 233 30 100.0 35 .............................. TAACTGATGAGCTGCCAGAAGATATAATAGTGTGG 168 30 100.0 35 .............................. ACTAAAATTAGGCATTTTTAGCCTAAATCTATATA 103 30 100.0 35 .............................. ATGAAATATCTATCCATTCCCCAACATTAGTAGCA 38 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 100.0 36 GCTCCCAGACTACCTATGAGGAATTGAAAC # Left flank : AAACCCGGATTTCTGAATACGATTCCTTTGGAAAAGGGT # Right flank : CCCCCGATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCCCAGACTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 2-2550 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWIM01000143.1 Mesotoga sp. B105.6.4 B10564_c169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2 30 100.0 34 .............................. CTATCCTCGCCAACCGCTTCAGCGGCGACAATAG 66 30 100.0 36 .............................. AGCAGATTATGGCGGGTACCGAAAAAGCTATTGAAC 132 30 100.0 36 .............................. TATCATCCGAGAAAGAAAGTTCCTTCTCAGACGATT 198 30 100.0 38 .............................. AAGACATTCCCTCTTAAGTACAGCCCAATGTATTTCTC 266 30 100.0 35 .............................. TCAGTTTTGGAACGGCGGCCACGAGCATCGGATCG 331 30 100.0 34 .............................. ACGGGCATTCTTATGTTATCGATGGAATCTCGTT 395 30 100.0 35 .............................. GAGGTATGACATGAAGAACACAAGAGGATATGATG 460 30 100.0 36 .............................. CCGGCTCCTCTTGGGACTGGGGGGAAGCAAGAACTC 526 30 100.0 37 .............................. TAGAGACGATCGCCGAGGTAGAGATTGAGAGAGTCAG 593 30 100.0 35 .............................. ATAAGCGAGAGCAAAGCCGAGCGAACTGCTACTGT 658 30 100.0 36 .............................. TCGTCTGACCCAGAGTAAGAGATCTTCCCGGTCAGA 724 30 100.0 35 .............................. ACCTCGGCAACCATTGCAAACTTCTCTGATTTAGG 789 30 100.0 35 .............................. TCGCACCTTTTGCTGCCACGTCTTTGAAGAACGTA 854 30 100.0 34 .............................. CCGGATACCAATAGACATCTGATGTTTTTTTCAG 918 30 100.0 35 .............................. AATATTTTAAGCGCAAATGGGATTATAACAGGACA 983 30 100.0 38 .............................. TGAGCCATAAGCAAAATGAAGGCCCATTCGGCATTAGT 1051 30 100.0 38 .............................. TCACATCGCCAACGATCTTTGCCCTAATCTCATCGTTT 1119 30 100.0 36 .............................. AAAGATATCTGACAGCGGAGGAATACGAGAATAATG 1185 30 100.0 36 .............................. ATGACTACAACTACAATCCCGCTAGCGGAGGATTGC 1251 30 100.0 37 .............................. TCAGAGCGTCACCACTGGCTGTAATCTTCACTGAGTC 1318 30 100.0 36 .............................. CAGAAATTTCACACGAGTCGGCGCCGGGAGAGCTGG 1384 30 100.0 36 .............................. GCAGGTATCGAAAAGGCTATTGAACTTGAAAACAGT 1450 30 100.0 33 .............................. AAATTGTAACATACCATTATAGCTATATATTAT 1513 30 100.0 36 .............................. GCAGTGGCACGAAAACTTAAGAGCTTTGATCAAATT 1579 30 100.0 36 .............................. TGGGCGCCTTTTCAAAGCTTTGACTACTTTTCTAAC 1645 30 100.0 35 .............................. TCTATCATGGTTCAAAATTCATGGAAAAGGGGGTG 1710 30 100.0 36 .............................. TGAACCTGGCAATAAGTAAGTGAACAAAATTCACGG 1776 30 100.0 37 .............................. TGAGAAGTAATCACGCCTCCTGGTCTGCTGTGTGGGT 1843 30 100.0 36 .............................. CTTACTTGACTACTTACCTTGATTCACGTGCATTTC 1909 30 100.0 34 .............................. GCGCAGTTGCTAGAAATTAGAAATGCACGTGAAT 1973 30 100.0 34 .............................. TTCGCTAGCGTGATATACCCATGCAATCTCTCCT 2037 30 100.0 35 .............................. CAAAGTAGTTGGAAAAATGGAAAATAGTATGATAG 2102 30 100.0 2 .............................. GA Deletion [2134] 2124 30 83.3 29 AT.GAA........................ CGAAAGGAGTGTGAGAGAGATGGTAGAAA C [2131] 2191 30 100.0 36 .............................. CCTCGATCTTCGTCTCTTTCTGATAGCTCTTCTTCG 2257 30 100.0 36 .............................. CCGGCTTAGATGACGTTGAAAAGCTCAAGTCAATCG 2323 30 96.7 36 .....A........................ TCCTGAGAAATGGTGAAGGCCTCTACGGTGAATCGA 2389 30 100.0 36 .............................. TCAAGCTGTGGTTCGAATCTACAACTCCTATACACT 2455 30 100.0 36 .............................. GCGAATAAGACGCCAGAAAAGCTTGAGAAAATCCTG 2521 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 40 30 99.5 35 GCTCCCAGACTACCTATGAGGAATTGAAAC # Left flank : CG # Right flank : ATTCATTTGACGGGTAATTATAATTTGTTCGTTTAGCTCCCAGACTACCTATGAG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCCCAGACTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //