Array 1 17959-14272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBGI020000006.1 Thiomicrorhabdus sp. HH1 2873445644_Ga0438909_006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 17958 28 100.0 32 ............................ GTTGTAAATCAGAAAGCCGCCGCCGTCCCACT 17898 28 100.0 32 ............................ TTATACATAGTCTCTTTTTTAGAGACATTATC 17838 28 100.0 32 ............................ CCAGAAAAAGACCCGCAGGGGGTATTGGCGGC 17778 28 100.0 32 ............................ TGCGGATCGCCAGCGCTAAGGCCCTGGGCGAT 17718 28 100.0 32 ............................ AGTTATGCAGCATTCGTTAAGGAACTGGACCA 17658 28 100.0 32 ............................ GTACCAATCGACGCAGACCCAGGCAGCCAGTA 17598 28 100.0 32 ............................ TCGTAAGTAAGAATTGCTTTAGGGATTCCGTT 17538 28 100.0 32 ............................ GACGATATTCTATTCTGCAGGCTGCCGTCTGG 17478 28 100.0 32 ............................ TTTACTACCAAGCCGATTGCAGAAGAGTTTGC 17418 28 100.0 32 ............................ TTTCAGTGAGTCAATTACACCCATATCTAAAT 17358 28 100.0 32 ............................ GGATCAATGTCGCTGTTTAATGCGGCATCGAT 17298 28 100.0 32 ............................ ATTTTGTTCCGCCGTCGATTCCCGGCTCTTCA 17238 28 100.0 32 ............................ CATACTTTGAGACAAAGCGACCGTCTTCAACC 17178 28 100.0 32 ............................ TCATGTGATCCGTCGATATAATTGTTGACGAT 17118 28 100.0 32 ............................ ACAAATGGGAATGGGTTCGGCCGTTCTGTCAA 17058 28 100.0 32 ............................ TAATCTTGATGTAGATCTTTACGTTGATCCTG 16998 28 100.0 32 ............................ ATTACCAGGCTCCTTGTTTGCTAAAGTGACCA 16938 28 100.0 32 ............................ CAACTGGTGCGCTGATCATTGAGCCGGAAAGA 16878 28 100.0 32 ............................ GCTGTCAGATGACTACAAGCGCCTGCTCTACG 16818 28 100.0 32 ............................ GACGGACATCGCTTTTATGAACGCCAAGCTGA 16758 28 100.0 32 ............................ TTATTGCGGTCTGGTCATCGCCAAAGCATCGG 16698 28 100.0 32 ............................ AAAAAAGCAGAACGTCACTATCCGAACCTTTT 16638 28 100.0 32 ............................ AGATAATTTTGCAGCGATGATCATGTTGTGTC 16578 28 100.0 32 ............................ TGTCCAGTTTGAGCAGGCCGGGTTGTTTTGCT 16518 28 100.0 32 ............................ GGTAATTGATTCCGTCAGAATTTCACGCAGAT 16458 28 100.0 32 ............................ ACGGGTATTACCGGCGGCAGCTGGGAAACGCG 16398 28 100.0 32 ............................ CGATCCAGAAGACAATGTCATTGATGATCTAA 16338 28 100.0 32 ............................ GTAACCATCAGATTGAAAAAGATGCAAACTAT 16278 28 100.0 32 ............................ AGTTTGCACTGCTGTATGCAGAGGATGCCGAA 16218 28 100.0 32 ............................ TGTGTTCTATTGTACCTAAATTTAGGAACAGA 16158 28 100.0 32 ............................ TCGGGTGATGGATCACCGTCTTGATCTGTATT 16098 28 100.0 32 ............................ ATATCTTGGAGAAGCAGGCAGGCATTTCCGGA 16038 28 100.0 32 ............................ ATACCGATCTACATACGTTGCAGTTGTTGAGC 15978 28 100.0 32 ............................ AAAAATAAATCGCGCGCTACTAATCCTCCAAA 15918 28 100.0 32 ............................ TCTGCTGAGTTGACAGGACTAATCGCAGATAG 15858 28 100.0 32 ............................ AACAGTCGCATTTTTTGATCAGACGAACAATG 15798 28 100.0 32 ............................ TGGCGATATGGGACTGATCTGCGTGGCTGCCC 15738 28 100.0 31 ............................ GCCAATTCTTCGATTCTGTCCTGCTCGTCTT 15679 28 100.0 32 ............................ GCTGACCTTCATTCGTTCTTAATTCATCTTTT 15619 28 100.0 32 ............................ TTTAATTCGTAAAAAATGCAATTTATTACTCA 15559 28 100.0 32 ............................ GTCACTTTTTTCCGACTCCGGCGCGTCACAAA 15499 28 100.0 32 ............................ GAACCGCTACATTGAAATAAACGGAAACTGCC 15439 28 100.0 32 ............................ GAAAAATTGAAACTGACGAATTCCATGCGTCC 15379 28 100.0 32 ............................ TTGAGATAGTCAAGTCCAATATTGTCAGCTTT 15319 28 100.0 32 ............................ ATTGTAAGCAGCATTTCATTCTCTCTAGTGAA 15259 28 100.0 32 ............................ GATGACGATGTAATTAATCGGTTGATCAGTGC 15199 28 100.0 32 ............................ ATAACCGCGCCTGCAATTACATACCAGAACCA 15139 28 100.0 32 ............................ GCTTGCTTTGCTCTGTTCCAGTTATAAGCGCA 15079 28 100.0 32 ............................ TCGTCTAACATTGATTTAATACTTCGACTCAA 15019 28 100.0 32 ............................ GGTTAATTTCGGCATATAACCCATCAAGCTGT 14959 28 100.0 32 ............................ TAAAATTTCTGCTTCACGTTGCGCTGCACGTA 14899 28 100.0 32 ............................ ATTGTGGAACAAGCAAAAGTATCTAAGGGAAC 14839 28 100.0 32 ............................ ATGCACTACCCCGGCGATCTCATTGATGCCGA 14779 28 100.0 32 ............................ TTCGGATGATGAGCAAGACGACACAATCGGTC 14719 28 100.0 32 ............................ GAATTGAAGCCCTTGAAGCAGAATTAGAGCTT 14659 28 100.0 32 ............................ GCTAAATCCTCGCAGGGAAAGTTCTTCTTGGA 14599 28 100.0 32 ............................ AGGCAAGCACGCTGGAAGAGTTTCAGGCCGTG 14539 28 100.0 32 ............................ AGACGGCCATATCCACCGGCTCGGCCTTACCG 14479 28 100.0 32 ............................ AATGCTTGAATTGCTTCAGCTTGTTTTTTTAC 14419 28 100.0 32 ............................ TTAAACGTCATTGATGATGTAATTAAGGCTCG 14359 28 89.3 32 .....................C..AT.. GGCCAACCAGAACTAGCGCAAGCCGTTAAGCA 14299 28 92.9 0 ........................AT.. | ========== ====== ====== ====== ============================ ================================ ================== 62 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAG # Left flank : AAATAGACTTCAGGAACTTAATGCGGCAAATTGGCTAGGTGGTCTTTCTGGATATTGCGCTATAACAGATATTCAGAAAATTCCTGATGTTGTGGAGTATCGAACTGTTTCAAGAAAACAGCAAAATATGACCAATGCAAAGTTGAAACGTCTAACCAAAAGGGGTTCAATTACTGAACAAGAAGCAAAACAATACAGAATAAAAATGTATTCACAAGGTTTATCTGAAGCTTACATAGAATTGGAAAGTGCTTCCAACGGCCATAAACACAGACGCTATATTGCAATAGGGGATTTGCAAGGTCAGCCAGTTGATGGTGTGTTTGATCACTTTGGCTTAAGTAAAACAGCCACAATACCTTGGTTTTAACCAATAATTTTCAGTTAAAAATTAAATTTAATAAAATCAAACAGTTACAACGTTAGAAGGAATAGATGGTTTTTTAATCCGAATTTCACTAACTTATTGTTGTAACTGTTTTTTTATGTCTTAAAATTCA # Right flank : TAATGGTGTCAGTGGAAAAAGTTACATCAAGAGGCATGCTGTTGAATCGCTGACTTAGATGATTAGGCCTTTAGTTTTATACATGGATTAAGTATTTTTTTATTAAGCGTTGCTTATGTCTGTCACAATATTAGCTTGGATTTTTCTGGGAGTCGGTGATGCGTGGTGAGTTTGCGCTTTTAAAGCAGTATTTACAGGGTGTGATTGTCGGTCAAGAGGCGTTGCTGGATAAATTGATGGTGGCGTTGCTGACCGGTGGGCATGTTCTTTTGGAAGGCCCGCCTGGTCTGGCGAAGACAACGGCGGTTAAGGCTTTGGCCGATGGCGTACACGCGAGCTTTCAACGTATTCAGTTTACTCCCGATCTGATGCCTGGGGATGTGATGGGCTCGGAAGTGCTTGATCCGACGACGGGACGTTTGAGTTTTGTTCAGGGGCCGATCTTTAACGAGATAGTGTTGGCTGATGAAATCAATCGTGCGCCGCCGAAGGTGCAGTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //