Array 1 162998-160894 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWMP01000007.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015001 scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162997 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162936 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 162875 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 162814 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 162753 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162692 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162631 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162570 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162509 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162448 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162387 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162326 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162265 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162204 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162143 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 162082 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 162021 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161960 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161899 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161838 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161777 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161716 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161655 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161594 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161533 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161472 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161411 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161350 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161289 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161228 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161167 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161106 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161045 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160984 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160923 29 93.1 0 A...........T................ | A [160896] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181853-179505 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWMP01000007.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015001 scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181852 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181791 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181730 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181669 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181608 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181547 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181486 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181425 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181364 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 181303 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181242 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181181 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181120 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181059 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180998 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180937 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180876 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180815 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180754 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180693 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180632 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180571 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180510 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180449 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180388 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180327 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180265 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180204 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180143 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180082 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180021 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 179959 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179898 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179837 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179776 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179715 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179654 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179593 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179532 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //