Array 1 1372498-1371554 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JABXQQ010000002.1 Citrobacter freundii strain RHBSTW-00228 RHBSTW-00228_2, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
   1372497	    29	 100.0	    32	.............................	TATTACCGCGAAAACATGCCCGCGTTTAAGTC	
   1372436	    29	 100.0	    32	.............................	AATCATTTATTTATCCCTGATTATTTATTAAT	
   1372375	    29	 100.0	    32	.............................	TACCACTGGCGCGGGCTGTCTTTCCAGTACAT	
   1372314	    29	 100.0	    32	.............................	GAATTTAACCTTCACGCCCTTCTCTGTGATTT	
   1372253	    29	 100.0	    32	.............................	GAAGGAGCTGGCTTTCCTCCGGCGGTTTAAAA	
   1372192	    29	 100.0	    32	.............................	ATTTTGTTCTTCCACATCATCAACTCCGTATG	
   1372131	    29	 100.0	    32	.............................	TGTCGATCAGCACTAATTCGCCGGTGTTCAGG	
   1372070	    29	 100.0	    32	.............................	CTGATCATCGTGAGCGAGAACGAACGCCTGTT	
   1372009	    29	 100.0	    32	.............................	CGCTGGCATCAGGCGTACCGGCACTTTAATTC	
   1371948	    29	 100.0	    32	.............................	TAAACCGTTGTCAGCCGCTTATGCATTGCCTC	
   1371887	    29	 100.0	    32	.............................	GTGGGTTAAGTCGCTGTTGATAATACGATGTT	
   1371826	    29	 100.0	    32	.............................	TGAGGTTTTGAGCGAAACAGTCGTTCGCTCGT	
   1371765	    29	 100.0	    32	.............................	CCCCGGTCATTTCCTCTGATATCGACTAGTTT	
   1371704	    29	 100.0	    32	.............................	TTTTATGCGACCGTTTAAACAGGCAGCGTGGC	
   1371643	    29	 100.0	    32	.............................	AAAAAGATCTTGATAATGATGCTGATGTAAAA	
   1371582	    29	  82.8	     0	............T............GGTA	|                               	
==========	======	======	======	=============================	================================	==================
        16	    29	  98.9	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CTTATCGAAGATGTTCTCGCAGCAGGTGAAATCCAACCGCCGTTACCTCCTGAAGATTCACAGCCCATCGCAATCCCACTTCCTGTTTCTGTGGGGGATTCTGGCCATCGGAGTAACTAACGATGAGTGTGTTGGTTGTTGTTACAGAAAACGTACCACCTCGCTTGCGAGGCCGACTTGCCGTCTGGTTGCTGGAAATTCGAGCTGGTGTATACGTTGGTAATGTTTCAACGAAGATCCGCGAGATGATATGGCAACAGGTCTCCGTTCTGGCAGAAGAAGGGAACGTTGTCATGGCGTGGGCAACGAATACGGAGTCGGGCTTTGAATTTCAGACGTGGGGTGAAAACCGACGTATTCCGGTGGATCTCGATGGATTACGATTAGTGTCGTTTCTGCCTGTTTTAAATCAATGAGTTAGCGATCTTTAAAAATACGGAAAAGTTGGTGGATTTCTTGTATGCCAAAAAAGGCTTAAAATTCAGTTGGGTAGTTTTAGA
# Right flank :  ATTTTAGCGTTACGTATTGAGCCGATGATGTCGTATTCTCTGCTGGCACAGGGACGAAAATGATAGCCCAACGTCTTCATCTAAAAAGGTGCTAAGAGTTTTTACCCGCTTTTGCCAGTTCTTTTACCAGCGGCAGCATAATGCGTACCACGTCGCGGCTACGGTGCTCTATCCGGCCCGGTAACGCTTTATCAATGTGCTGCTGGTTATCCAGTCGCACATCGTGCCAGCTGTTGCCTGCCGGGAACGAGGCGCTTTTGGCGCGCTGTTGATAGCCATCTTTCTTGCCCAGGTTCCAGTTGGTCGCTTCAACGGAGAGAACGGAAATGCCCGCGTTGTCGAAGACCTCTGCATCGTTACAACATCCAGTGCCTTTCGGATAGTCTTTGTTCAGACCTGGATTGGTGCTGGCAACGATACCGCGGCTGTGCGCGATAGCCAGTGCCCGGTCGCGCGTCAGTTTTCGCACCGCTTCCGGGGTTTTCTTACCGCTATTGAAA

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [5-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//