Array 1 124-3023 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFZP010000023.1 Amphritea pacifica strain RP18W 23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 124 29 93.1 32 C.C.......................... AGGCCGAGCAAGGCGATCTGATGCGTCAGTGC 185 29 100.0 32 ............................. AAATCTATTCTTGGAGTTTATATTAACGATAA 246 29 100.0 32 ............................. CGCTTCTATGAAGGCTTGGGCGGCTCTATTTA 307 29 100.0 32 ............................. CAGACGCAAGCCGAGCCGTATCACCAGTGAAA 368 29 100.0 32 ............................. AGCGTCAGCAATTTGAACAACAGCAGCAGAAA 429 29 100.0 32 ............................. TAAACGATACGCTGGGCAGCCATAACACAGAG 490 29 100.0 32 ............................. GTAAGTTAGACCGGCAGCAATTTAGTTTGTCA 551 29 100.0 32 ............................. CGGATATCAGGCATTTGCAATACCCTCGGCCA 612 29 100.0 32 ............................. TCAATAGATTATTTTCAGTTTATGCCTTTATT 673 29 100.0 32 ............................. TGGGCCGTGCATAATCCCAACAACAGACACAG 734 29 100.0 32 ............................. AGTCCATCGATGCTTTTTCCGATGTTGTTAAA 795 29 100.0 32 ............................. CCCAATCATGCCCTACATCATAGGCAGCGTCA 856 29 100.0 32 ............................. GTGATGAAGTTGAGCTGCGTCTTACAGCAGGC 917 29 100.0 32 ............................. CTATTTAAACACTAATCAGGATTGCATAAAAT 978 29 100.0 32 ............................. AATTAACTAAGGAGGATTTACTTGAATAAAAT 1039 29 100.0 32 ............................. TCTTTATGGTAGAGCTTCCCAGCAACTTTTTG 1100 29 100.0 32 ............................. ATTAAAAATTGTGATGTCTCGTCTATATATAG 1161 29 100.0 32 ............................. GAGTTATTGTCTTGTTACTCACAGAAAGATTG 1222 29 100.0 32 ............................. GAATCTTATTCAACTACAAGAGCTATGTTACA 1283 29 100.0 32 ............................. ATCTTTCACGATGGCTGGAGCTGGCGTGTAGA 1344 29 100.0 32 ............................. TCAATAGATTATTTTCAGTTTATGCCTTTATT 1405 29 100.0 32 ............................. CCGGTTGATACCCATGGGCTGGAGCACCATGT 1466 29 100.0 32 ............................. CTATCAATTAAGAGAAGGTGATTATTGTGAGA 1527 29 100.0 32 ............................. TAGACAAGAATGGGCACCCAGTTCTTGAGCTT 1588 29 100.0 32 ............................. AGCGCATGGAGCTAAAGTTTTTAACTACGTTC 1649 29 100.0 32 ............................. CCAGCGCGCAGCGGGTGGTGAGTGCAGTTCGC 1710 29 96.6 32 ............................A GCAGCGATCTCTGAATCACCTTCTTGAGATTC 1771 29 100.0 32 ............................. ATGATCTGGCTGCCGCGCTGAATAAAACGACG 1832 29 100.0 32 ............................. CGCAATATCAGGACACTTGGATGTAACGGATT 1893 29 100.0 32 ............................. ACTACTGTCTCAATGAGACACAGCCGGGCTAC 1954 29 100.0 33 ............................. AATAGGCCAGAACATAAAACCTAAACCGAACAA 2016 29 100.0 32 ............................. CACGCATTCAACTCAGTGCTGTGCAAAAAATC 2077 29 100.0 33 ............................. CGGCTGGCATGGCTGACGCATTAGCGCAGTGGA 2139 29 100.0 32 ............................. CGGAAATTGATCTGATCTATGCCCACATGGAC 2200 29 100.0 32 ............................. TTTAACTCAAACAATGTCCTCTCAGTTTGTGT 2261 29 100.0 32 ............................. GGTATACACCTCACACAATGTTTTAAAATGAT 2322 29 100.0 32 ............................. CCAGCGCCGTTCCAATAACGACTAATTTACAG 2383 29 100.0 32 ............................. TCTCTTTGCTGAATTCAGGGAGATCAAAGACC 2444 29 100.0 32 ............................. ATCGGTTTAACGAGTTCAGGCAATGGGCCACC 2505 29 96.6 32 ......A...................... AAAAGAAACAATCAAAACAAAAACGCGATATC 2566 29 100.0 32 ............................. GTGTTTAGTGGCGTTGGCGATGCCTTCACCAG 2627 29 96.6 32 ............................A GCCGGTTGTGCGCGATCATAGGAATGTAAACT 2688 29 100.0 32 ............................. GGAATGGCCCGGCCGGTGAATTGAAGGAATAA 2749 29 100.0 33 ............................. CGCATTCAGCATATCTGCCGCGGGATACCGCTT 2811 29 100.0 33 ............................. TATGAAAAAAATGAACGTGCGCCTGATGCTAAC 2873 29 100.0 32 ............................. GTAGCAGCAAAAAAAACAGCTGTGGGGAATGG 2934 29 96.6 32 ........T.................... GCTTCCCAGGCGGCATCACGCTCTTCGGCGGT 2995 29 82.8 0 .....................T.T..GAA | ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.2 32 GTGTTCCCCGTAAGCACGGGGATGAACCG # Left flank : GGATCAAAGGTTTCAACTTACTGACCCTGGTAGTCAATAATGTTGAGTTCAAGGATGGAGAACAGGTAAGGGATCAATCAGATAGGAATGCCGCCTGATCCCATACACCAGATTTGACAATAAC # Right flank : AATAATGAGTAGGCCCGTAGACCGACTTCTACGGGTACCCTGAACACCTGGAAGCCCTTCAGTCGGGGGCGGCACATGTTCAAGGCACGTAGATTATAGCTAATTTACAGCGGTAACGTTGGTTAACCTTCTGGAGAGTAGGTTAAAGTATTCTCATGCGGATTGATTGACTGACTTAGTTGTTTATCTCTAACTCTGCCAGCTTCAGATCGAGCGTGGCTTTGAGCAGTTTATAAAGCCGGATCGCGGCATCGATCTCCTCTTTGCGGTTGGTCAGGCTTTCAATATTCAGACCCAGAGGGATACCCAGGTTACCGCAGGCTTCCAGGATCTGATCCAGGTTGTTGCGGCAGATGCGGATCGATTCAGCCAGTGGGTTATGGGCATCAAGAATCCGGTGACGGGTCGCCTGTGGCACTGAGATACCCAGCCACTCCATAAATTCAAGTGTCTTTGCACTGCCGCAAGGTGTAAAGGTGAGGATAATCCGTTTCGGTGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 155123-152818 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFZP010000004.1 Amphritea pacifica strain RP18W 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================= ================== 155122 28 100.0 32 ............................ ATGATCTAACGATATGCTCAAAATCACCCTTT 155062 28 100.0 32 ............................ TCTTTTAACTTTTTCGACATATCAGCGTGGGC 155002 28 100.0 33 ............................ TCCAAGATTACCGATTATGACGGCTTGGTATAT 154941 28 100.0 32 ............................ TTTCACAACTGCAGCGGCTTCTTTCAGCGGCT 154881 28 100.0 32 ............................ ATAAGCGTCTTGAGTTCAGGAAATCCGTAAGC 154821 28 100.0 32 ............................ ATCTCCGGTGAAGAGCTGCTGGACGGGTTCAA 154761 28 100.0 32 ............................ CCATCCCAATTGAACCCTCGCTTTTCCCTCTG 154701 28 100.0 32 ............................ CTAGCAACTCCGCTGCCGATCGGCACAGAGGT 154641 28 100.0 32 ............................ ATTGCGTTGCAGGATGCCAAACACACGGTCGA 154581 28 100.0 32 ............................ GGAATCCACACGTTAGCGGGGGCAGCACTTAA 154521 28 100.0 32 ............................ TACACAGAAAAAACGTGCTAAAGCTGCTTATC 154461 28 100.0 32 ............................ TTCAAGGTTATTAAAGTGCATTAGCACAAACG 154401 28 100.0 32 ............................ TGTCGCGTCTTCTGCGCCTGTTGAGGATGTTA 154341 28 100.0 32 ............................ TAACAACTGCCCAGAAAAATTTACTCAAAAAC 154281 28 100.0 32 ............................ CGGCACGGGCGATGTCTATACGCTGCGTGAAG 154221 28 100.0 32 ............................ TCAAGCAGTGTCTGATGGATTGGTTACTGTTG 154161 28 100.0 32 ............................ TGGAACAATCGAACCCGGAGCCATCCCGAGAC 154101 28 100.0 32 ............................ TGCACCACGGTTTTACCGGAGCCGGACGGGCC 154041 28 100.0 32 ............................ GCTAAGAAGTCCAGTACCGCTAAACCGGTTCG 153981 28 100.0 32 ............................ TTGCCACGGGCTGACGTCAGGAGCGAAATCCT 153921 28 100.0 32 ............................ AGATAGAGCAGCGCTGGCTTGAAGATATTCGT 153861 28 100.0 32 ............................ ATTGTCGTTGACCCGGTAGCAGGTTACTAGCA 153801 28 100.0 32 ............................ TATTAAGGGAAACCTAAGAGATTGTGGTTTCT 153741 28 100.0 32 ............................ TCTCGAATCTAAAAACGTCCATATCTGATCCG 153681 28 100.0 32 ............................ AATCGACCAGCACGCCAGCCCCGTCGAGTGAT 153621 28 100.0 32 ............................ GCTGGCCCGGGCGATCATCAAGCATGAAAACG 153561 28 100.0 32 ............................ AGATTGTAAAAACATTGCGATTAAACACAATC 153501 28 100.0 32 ............................ TTGTAATTCATCGGGCTTCCGGTGATGAATGT 153441 28 100.0 32 ............................ TAAACTAGGTCGTAAACCTAAATTTTCATCCT 153381 28 100.0 33 ............................ TTAAGCGTTACCTTTCCGCTATCTTATTTTAAA 153320 28 100.0 32 ............................ ATCACAGTCAGTGTGGTAAACCCATTTGTATG 153260 28 100.0 32 ............................ CACCGTTTGTGAACGGGATGAATCCTTCATGC 153200 28 100.0 32 ............................ ATTGCTACTAACAAGAAAGAGGCAAAAAGTCG 153140 28 100.0 32 ............................ TCTGCATTGCTTTCAGAAGTCGTTGCAGAGGC 153080 28 100.0 205 ............................ GGCTGCTGAAAGTGGCTTACAGAAAGGACTTATCTTAGAACCCTTTGTGGTAATACATGCTTGAGTGGTGATGCTTTTGTGGGAGTTGTTTTTACATGTTTTCTCGGTACTCCACACCGACAGAATCTGAGATCAATCGCGACGGGGGCGTCGCTCCCACAGGTAGTTGGACATCGCGAGGCTGGAACACTCTGGTTGGTTCATA 152847 28 75.0 0 .C......T..C.GG..A..G....... | TT [152821] ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================= ================== 36 28 99.3 37 GTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : CCCGGGACTACACCGCCACACAGGCCCTTGGTGCAGCGATGCGTGAGGCCGGTGTGGAAGCGTTTCAATATCGTTCTGCCCGGTCGATACAATCCGGGCTATGTGCTGCACTCTATACCGCCGCGCTGTTCACCAGCAATCAGCCTGACACCACCGCCCAGTGGCTCTGCGAACTGACCGCCACAGGTGTCACCTTCAAAGCCGTAGCCTCTCCCCAAACCTGGCATTACCCGTTGTCTCAGTTTAAAGTCGATGGTGAGTTTCCGTTACCGGCGTGATGGGATGATTTTTAGGGCAGGGGGGCTGAGAAAGAGAGCGGTCTTGCAGCTTTCAATAAATAAATTTGTCGTCTTTATGCCCTTGGTTTTAACCCTTTATTTTAGGCTCTTTAAAAATTACTTAAAAAACAAATAGTTGCAGAAAGCGCTAAAACTATTGGTATTTTTGATAATATCTGGTTAAGTGTTTGATGCAGCAATCTTTTTCTGCGCTATACTTCA # Right flank : GCGCAGTACCAGTGGCCGCTGACTCCAGAGCTTGAACCGGCACGCTTTTAAGGGCGGGCAAAGATCTTCTGGAAAGCGAATCCCCTATGTGTTTCCTGCCCGAACTCCAGATACAATTAAGCCCCGTTGAAAAACGAGGCTTAATTGATGTCGTCTGTGGTACCAGTGGCCGCTGACTCCAGAGCTTGAACCGGCACGCTTTTAAGGGCGGGCAAAGATCTTCTGGAAAGCGAATCCCCTATGTCATTCTGCCCAAACGCCAGACACAAAAAAGCCCCGTAGCAAAACGAGGCTTTCTCTTCAAACGTTCATGGTACCAGTGGCCGGACTCGAACCGGCACGCTGCTTTTAAGGGCGGGCGAGGATCTTATAGAAAGCGAATCCCCTATGTCATTCTGCCCAAACGCCAGACACAAAAAAGCCCCGTTGCAAAACGAGGCTTTCTCTTCAAACGTTCATGGTACCAGTGGCCGGACTCGAACCGGCACGCTTTTAAGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5514-172 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFZP010000043.1 Amphritea pacifica strain RP18W 43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5513 29 100.0 32 ............................. ATGGTTTGCCGGTTTTCGGAACTATTTATTTA 5452 29 100.0 32 ............................. ATATATTCGCCCAGATGGGAACAAGCCTGTAG 5391 29 100.0 32 ............................. TTGAATATCTACCCGGAAACACTTCCGCGTCC 5330 29 96.6 32 ............................T ATATGCACCGGATTTGCTAATACAGGTAACAC 5269 29 100.0 32 ............................. TTCGCTGACAGGGACGATGCTGAAGTGATAGC 5208 29 100.0 33 ............................. GTATGAGCAATCGGAACGAAGCTGTAATTGGGC 5146 29 100.0 32 ............................. ACAGCGCTCAGCGGGTGGTGAGTGCTGTTCGT 5085 29 100.0 32 ............................. ATACCGGACGGCTATGCCTTGGCATGGATTCA 5024 29 100.0 32 ............................. CGTTTGCGGCTTTGCGCCAGCCCCGCGACATG 4963 29 100.0 32 ............................. TCCTGATTTCATATGTTCAGCTACGACCTGAG 4902 29 100.0 32 ............................. CACAGAAAAAAGGTGGGCGGTCATGAAAATTG 4841 29 100.0 32 ............................. GATGCTGAAACGCTGGGTATGCTGGGCGATCT 4780 29 100.0 32 ............................. TAATAACATCACGGTTGATGAAATCGGCTTTA 4719 29 100.0 32 ............................. TCCAGCATGTCTTGTCGGGTGAATGGGAATAT 4658 29 100.0 32 ............................. TCATACTCTGAGGTGCCGGGGGGTGGTTACAT 4597 29 100.0 32 ............................. CGATCGTTCACGCCCAAGCAACTGGCCAGCGC 4536 29 100.0 32 ............................. GTTTTTATAGGGGCTGATTTCCTGTTTTTTTA 4475 29 100.0 32 ............................. GCCATACGTTTCAGCTAACTCAGCCTCTACAG 4414 29 100.0 32 ............................. AGCAGGCGGAATCAGTGGGCGATATTGTAAGA 4353 29 100.0 32 ............................. CGTTTTATTGATGGCATGACTGATGAGCAGTT 4292 29 100.0 32 ............................. CTGCCCGGCTGTTTTCAGGTGGTTTTGTAGAT 4231 29 100.0 32 ............................. GTGGCTGAGGTATTTGGCAAGCGCCATGATGA 4170 29 100.0 32 ............................. CCTGACTAACAAAATCACCGTCAACGTCGAAT 4109 29 100.0 32 ............................. TTGCAGCCGGTAAGCTGACGCACGATGAGCGG 4048 29 100.0 32 ............................. GGTAAACACGATCTGGTCCGTAGTGTTGATAT 3987 29 100.0 32 ............................. GGTAAACACGATCTGGTCCGTAGTGTTGATAT 3926 29 100.0 32 ............................. GGGTACGGGTTCACACCTGTAACAGCGAAGTC 3865 29 100.0 32 ............................. CAGAACTGCATGGTTCTTGACTTTGGGGGCAA 3804 29 100.0 32 ............................. CAGACTGATTTCATCTATAATAGGTTTCATGT 3743 29 100.0 32 ............................. GTTTTAGCCGACAATCTTCATCAACAATCAAT 3682 29 100.0 32 ............................. CCGCCCGACGGATACAGGGGGGCCAGTCATGA 3621 29 100.0 32 ............................. CGTTGACGGTGTACATACAAGAGGCGGGGAGT 3560 29 100.0 32 ............................. GATGGGCGAACCCTGATGTTGAGGGTGACGTG 3499 29 100.0 32 ............................. CTCATCACATTCAGTTGCCTGCAGTTATGATG 3438 29 100.0 32 ............................. CAGTTGGACCGGGTTTATTGCCACCTGGGCCA 3377 29 100.0 32 ............................. TGCTACTGGGCTATCAGAAGCGCTGGATCGCC 3316 29 100.0 32 ............................. TCGTCTTTTGATTCAGCGGTGATCGAGATACC 3255 29 100.0 32 ............................. CAGATAGTATTATGCTTAATCGGTTAACAGGT 3194 29 100.0 32 ............................. CGTTTACAGACATGGAACTTAGAATGCTGTAC 3133 29 100.0 32 ............................. ATTTTTAAAGAGTCCAGTTCATCTTTTGTTGT 3072 29 100.0 32 ............................. CGTCATCGATGCAGATTGTTATCTGCAAGCCC 3011 29 100.0 32 ............................. CACTGTCTTTCTCCTCGCTTATTTCTGGGACG 2950 29 100.0 32 ............................. CCCACGAACCCCATCTATTTTCGGAAACAGCA 2889 29 100.0 32 ............................. CGTACCATTGCTTTCGATTTGGACTATATAAC 2828 29 100.0 32 ............................. CACCCTACAGAGTCCGAACGCCTTGTGTTTGA 2767 29 100.0 32 ............................. CCCATTAGGATCAAGATTGAAAATAATCATAT 2706 29 100.0 32 ............................. GTGGCGGAACCGTTGTTCTGCTTAATCAATAA 2645 29 100.0 32 ............................. ACATCGACCTCACGCCCACACGCTGGATCAGC 2584 29 100.0 32 ............................. CTTACTGATGTAATTGAGCATATGCCTCAAAG 2523 29 100.0 32 ............................. GGTGATGAAAAATGGAACTATATTACACAGCA 2462 29 100.0 33 ............................. CGCTACTGCAGCGCTGCCAGACAGAAGAAACTG 2400 29 100.0 32 ............................. CCTGCGGGTATTTCTGTAGCAGCCAGTAGCCA 2339 29 100.0 32 ............................. GGAAGAATTTAGGACGATCTAATGAAACCTCT 2278 29 100.0 32 ............................. TAATCAGCTTTTCAGCTGGGGCTTTTGCCTTA 2217 29 100.0 32 ............................. TGTCAGCAAACCATTTTGCCAGGCCATCCGCA 2156 29 100.0 32 ............................. TATCACCAAAAAGGTATTAAATGTAAACACCT 2095 29 100.0 32 ............................. ATGACGGCGAGATTATAACGCTGCTGATTCAC 2034 29 100.0 32 ............................. CACGCACACCCTGATTTTCGGTGTTGCCCATT 1973 29 100.0 32 ............................. TGGTTCTCTGAATTGAATTATCGATCAGTCAG 1912 29 100.0 32 ............................. CGATCGTTCACGCCCAAGCAACTGGCCAGCGC 1851 29 100.0 32 ............................. ACACCACCTCTCTCAGCTATGCCGCCGGAGAT 1790 29 100.0 32 ............................. CATCCACATCGATGATTGATGAGTTGATGTTG 1729 29 100.0 32 ............................. CATAACCTTTTGATAATTAAACCTTATATATC 1668 29 100.0 32 ............................. GGTATCTAGCTCCGCTTGTACCAAAGAAAACA 1607 29 100.0 32 ............................. CGCAATAGGGAAGGAAGCAATGCACAGTGGGA 1546 29 100.0 32 ............................. GCTGGGGTTGAGCTGCCGGTTGAGCCCGTGCT 1485 29 100.0 32 ............................. TCACCGGCTTACGATCCATCAGTTCATCTAAC 1424 29 100.0 32 ............................. CCTGAGTTGTTGCGGCTGCTGCCGTGGTGTCA 1363 29 100.0 33 ............................. CAGGGTTTAAAGGGCTTTCTGGATGCTGCCGGT 1301 29 100.0 32 ............................. CCTCCTCTCCATCAAACTCCCAGCCAGTACCA 1240 29 100.0 33 ............................. TTTTTAGACAACCCCTCTTTTGATAGATTAAGC 1178 29 100.0 32 ............................. AGATCAACGTGGACATCTTCGCGGGCGGAGGC 1117 29 100.0 32 ............................. CTATTCCGCGGGCGTTTGAGGGGGAGGATGTT 1056 29 100.0 32 ............................. TTAAATTTAACTCCGGCATAGGTTACAGCTGA 995 29 100.0 32 ............................. CAGTTCCATTCGCTTGAGACCTTCTGTGTATT 934 29 100.0 32 ............................. GCTATCCAGAATACCCTCCGAGGTTGTTCCAT 873 29 100.0 32 ............................. CACACGGAAGCAGATAGCATTATGCTTAACCA 812 29 100.0 32 ............................. CGTTCTGCACAATTATTTTAAATATTTTTAAA 751 29 100.0 32 ............................. CCGTTGTTGCTATCGCCACCCTCGGCCTGATT 690 29 100.0 32 ............................. TGTGGAAATGGGGTTAAGGCTTGCTCAGTCAA 629 29 100.0 32 ............................. CTGATAAGAAACTACGGGGTGGCTGGAAGCGT 568 29 100.0 32 ............................. CTCAGCCAGCACCACAAAGCCAGCAGCTTACT 507 29 100.0 32 ............................. GCGCTAACGAAGCGCCTTTTTCTTTGGTTACA 446 29 100.0 33 ............................. AGTTCAGCAGCCTTTGTTGCTTCAGCTCTGATC 384 29 100.0 33 ............................. GAGAACACCCCTACCGGCAACCGTGGCCGGAGG 322 29 100.0 32 ............................. GTATGATGTGTTAGTTGATGATCTACGAGCAA 261 29 100.0 32 ............................. GATGCTGATTGAGATTCAGGATCGTGATGTCT 200 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 88 29 100.0 32 GTGTTCCCCGTAAGCACGGGGATGAACCG # Left flank : TCCCTTTGATCGAAGAGGTTCTCGCCGCTGGAGAGATAGCGCTTCCTGACCCCCCCAAAGATGCTCAGCCACCTGCTATACCCGAACCGGAAAAAATCGGTGATGCAGGACACCGGAGTAAATAACCATGAGTATGGTGACTGTGGTTACAGAAGCGGTACCGCCCAGGTTAAGAGGTCGTCTGGCCGTCTGGTTGCTGGAAGTCAGGGCCGGAGTTTATGTGGGTGACGTCTCTCGTCGAATACGTGAAATGATCTGGAATCAGATAGCCGAGCTGGCGGAAGAGGGCAACGTGGTAATGGTTTGGGCTACCAATACTGAATCAGGTTTTGACTTTGTCACCTACGGGGAAAACCGGCGTATGCCTGTTGATTTTGATGGTCTGAGACTTGTCCGTTTTCTTCCACCAGATGAATAAAATACTTACTTTCGCTCTTTAAAAATTTGGTAGATTTTTAAAGGAGAAATTTATCCTTTAAATACAATAATGTATATTTAGA # Right flank : GGCTATGGTTGTGCTGGATGAGATTGCGAATACGTGTTCCCCGTAGAGATATGGTGATTTCTGGTGTATGGAGAAAGATAGAGAGGGTGGCGTATCCTGTTGATTGATCTCGCCAGATCGCAATCAACAGAAGAGAGATACGCCATGAGTAAGTTTACCCTGACAGCCCGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 71431-74698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFZP010000012.1 Amphritea pacifica strain RP18W 12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 71431 28 100.0 32 ............................ ATCGGATTTAGTGACAATCACGACTTGTTTAT 71491 28 100.0 32 ............................ TGGTGAAGAAGGACCAAAACAGTGTTGTGGCG 71551 28 100.0 32 ............................ TAATTGTAATTCTGTTTCTCAGTTTTCAATAG 71611 28 100.0 32 ............................ TCGGATTCAACAGTCGTAGTAGTTGAGACCTG 71671 28 100.0 32 ............................ TTTGCCGTTGGTTCAGCGATTGCTCAGGCAGA 71731 28 100.0 32 ............................ TTTATTCGATGCCTTTTGCGGAGCAAAACCAG 71791 28 100.0 32 ............................ TGTTGTCACTAAATGGGGTGTTAGCAAAGTCC 71851 28 100.0 32 ............................ ATAGTCCAAACAGCCTCATTGGTCGCACTGGC 71911 28 100.0 32 ............................ TCTTCTTGCTGAATGGTTTCGACGGTCTCGAT 71971 28 100.0 32 ............................ GTGAATGTTGATGGCACGCTGCGCGACTTTAT 72031 28 100.0 32 ............................ CAGATAATGCGCGGGCGCTGGCCGATGTGGTC 72091 28 100.0 32 ............................ AGAATACGACCCAGTCAAACACCTGGAACAGC 72151 28 100.0 32 ............................ GCAACCTGGTCTTTTGCCAGCTGGGTGCCAAC 72211 28 100.0 32 ............................ ATCAGTGTCTGTTCGACACTCGGGGTCACAGC 72271 28 100.0 32 ............................ GGATCTGCTAACGCTGCAATACCCGCCGAAAT 72331 28 100.0 32 ............................ GATTCGATGATTAAACTTCGTGTTGTCATTCG 72391 28 100.0 32 ............................ TTGTGGGTGTCCGGTGCTACGCATAATTTTAG 72451 28 100.0 32 ............................ CCAATAATAACCCTCAGCGTATGAAACATAAG 72511 28 100.0 32 ............................ TTGGCGGTTCTGATATTGCGTTCGCTCGTTCG 72571 28 100.0 32 ............................ ATCGGATTTAGTGACAATCACGACCTCTTTAT 72631 28 100.0 32 ............................ TTCACCCGCCTTAACATCCAGATGCTTCACTT 72691 28 100.0 32 ............................ CGCCAGGCGCTTAATCCAGATATCCTCACCAA 72751 28 100.0 32 ............................ TTGAAAGCATATATGGGGATGACGCATGACCA 72811 28 100.0 32 ............................ ACTCATTAGGCGCGGATTCATAGAATCACCAA 72871 28 100.0 29 ............................ ATCAGTTTAAAGAGCTGGCTGAGGTGAGT 72928 28 100.0 32 ............................ GCAAAGCAGGCTGAAGAAAAGGCGGCAGCTAA 72988 28 100.0 32 ............................ TTTAACCAACTGAAGGATATTTATAATGAAAC 73048 28 100.0 32 ............................ CTGAACAGACGCATTAGCAAACATATACAGGG 73108 28 100.0 32 ............................ GTGAGGCTCTGTCGCAGGAGACTGGATTTGCT 73168 28 100.0 32 ............................ ATTTTACGTTCTAGGTTCTGGGCTTCACTCCA 73228 28 100.0 32 ............................ ACCAGAGCGCTTGCAAGCCGGAGAATTGACAC 73288 28 100.0 32 ............................ TCACAGTCAGTGTGGTAAACCCATTTGTATGA 73348 28 100.0 32 ............................ ATAAGTGAAGCCAGAAAATAAGCATTAAAACA 73408 28 100.0 32 ............................ AGTTGGTGCGAAAGTCGCTGTCTCGGGATCGT 73468 28 100.0 32 ............................ CTGGGCAAAGTGCGCAAGGCGTTAAACCGGTT 73528 28 100.0 32 ............................ TGTAGCCGCCTTTCTTCAGGTGCATGTATTGG 73588 28 100.0 32 ............................ TACAATCAAGCAAACAACTAGCGCTTACGGCC 73648 28 100.0 32 ............................ AACATCTGATAAAAATGATCAAATTAGTTATC 73708 28 100.0 32 ............................ TACCGCCCGTTCGCTACGTAGCATCGTAGAGA 73768 28 100.0 32 ............................ GGTACCGGATGACCTGCAGTCATTACAGAATC 73828 28 100.0 32 ............................ CAGGTATGGCGCAGCCAGTGCGGCGTACCGAT 73888 28 100.0 32 ............................ AGGGCAAAGCCTGATTGCTCTGCTACAGCATC 73948 28 100.0 32 ............................ CATATTTAGACCCCAGCCGCCGTGCATCCTCC 74008 28 100.0 32 ............................ TGAGATGATCAAAGCAAGATGTGGCCACATAG 74068 28 100.0 32 ............................ TGTTTTTGTATTGTTTGCTTCAGTGATTAGAA 74128 28 100.0 32 ............................ AATATAGAAAGCTATTATCAGTATAAACCTTA 74188 28 100.0 33 ............................ ATTAATGATCACAGGCGCTGAATAATCATTCTC 74249 28 100.0 33 ............................ AAAAAAGAGTTTAAAGCTATGTCCACACTACTA 74310 28 100.0 32 ............................ ACCACTCAATCTCAATATCCTTATTGAAGAAA 74370 28 100.0 32 ............................ GATATATCTGTGTCAGCGACGGGGGGTGTCGA 74430 28 100.0 32 ............................ TGATCGACCTGTACTTTAGGCGTCATATTTAA 74490 28 100.0 32 ............................ TGTAACCCATCTCTTAATCCTACCCGAAAAAT 74550 28 100.0 32 ............................ AGCAGAACTTAACGAATGGATGAGCATGGCGG 74610 28 100.0 33 ............................ CAGCAATCAGGGTGTAACTAACAGATATGGAAT 74671 28 82.1 0 .....................AA.ACC. | ========== ====== ====== ====== ============================ ================================= ================== 55 28 99.7 32 GTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : TAAAGACCTGGATCACTTAATGAGGCTGAACTGGATGGGGCCGATGTCAGGCTATTGCCAAGTAAGTGCAATACAGTCAGTACCCTCAGGTATCAGTTACCGCACCGTATCGCGTAAGCAGGCCACGATGACTCAATCAAAACTCAACCGACTAATAAAACGTGGAAGTATCAGTCAAGAACAGATGAAGGAGTATCGTGCAAAAATGTTCACCAAAGGCTTGGATAATCCCTATGTAGAATTGGTCAGCGGTTCAAATGGCTACAGACATCGACGCTATATAGAGTTTGGCCCGTTATTGGATAATCCCGCTGAAGGCACTTTTGATCAGTTTGGGCTCTCCAAAACTGCCACAATCCCTTGGTTTTAACCCTTTATTTTAGGCTCTTTAAAAATTTGTTAAAAAACAGATAGTTGCAGAAAGCGCTAAAACCATTGGTATTTTTTCCAATATCGGGGCAAGTGTTTGATGCAGCTATTTTTTTCTGCGTTATACTTCA # Right flank : ACTTCCCAGAAAACCGTATCGACAGGCGTTTACTGCTGTTTACGCGGATTCCATGATCGTTTTGCTCAGGCTATATAGGGTGATTCCGGTGGTAGTGTGGGCCAGCGCTGTTCTATACGGTCGCCGCGGATGCCGAGTAGCTCGCCGAACTGCAACAGGACCGCTTCGGACTGGCTTGGCCGCTGGAAGAGGAAGTCTCCTACTGCCAGTTCGACCCCTTTGGCGGCATAGTAGCCTTCCTGGTTTGAGCTTTGGTAGATCGTTGCAGGGGTTACTCCTGGGGGGGATACAGGCTCGGCAAGCCAGTTTCCTCCATAGATAAAAAGAGTGTCCGCCTGGTTTGCGTTCCACAAGGTCATTGGGGCAGACAGCCATTCGAGACTTGGCAGGCCGGTACTGGGGTGTCGTTTGAGCAGAGGGGAGGCGATATAGGCGCAGGGTTCGAAGTCGGTCAGAAGTGGCAGGTCGTAATGGCTGGGCTTCAGCAGTGCGGAACCTAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //