Array 1 112501-111127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZPJ010000001.1 Streptococcus oralis strain CR140 Soralis_CR140_NinaOddballs_Sia_NO_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 112500 28 100.0 33 ............................ TGTTCGATACGATATGTTAGATGCTTTAGTAGA 112439 28 100.0 33 ............................ CATTCTTTAAAATCAAACTTGCAACTTCTTCTC 112378 28 100.0 33 ............................ TATTCAAGTTATCAACCTAGTTGACTTTGTGAC 112317 28 100.0 33 ............................ TAAGATCCTGGCGATTTTTGAAATGCAGATAGG 112256 28 100.0 33 ............................ CGCTACTAATGAACTAATTTTGCATGTCTTTAC 112195 28 100.0 33 ............................ TTATAAATCCAATTCCAATGCGCTTTCTGACCT 112134 28 100.0 33 ............................ CTCGGCAGTCAACCGCTTTTCTTGCATGCCATC 112073 28 100.0 33 ............................ TAAGTATCAACCCTCTACAACCTTTTGCGAAAA 112012 28 100.0 33 ............................ CATAGCCGAAATTCGTGCAAATAATCGCTTCAG 111951 28 96.4 33 .............A.............. CACATTAAAGTTAATTGTACCTGTCACAGAATT 111890 28 92.9 33 .............AT............. TGGCTACGAGCCAATCTATTACAGCTACAAGCC 111829 28 92.9 33 .............AT............. TATCAGCATGACTGACCGTGACCTTGATACGTT 111768 28 96.4 33 ...................A........ CGGATAAGGCATGGCAATGATGTCTCCGTTTGA 111707 28 96.4 33 .............A.............. TCGTATTCCTTGAACTGGAATTGCTGGATATAA 111646 28 96.4 33 .............A.............. CAGGCAAACACAGATGCTTGTATTCGCTTTATG 111585 28 92.9 33 .............AT............. CGGTCTCGAAGACCTGAAGAAAGCACGCAAGAA 111524 28 92.9 33 ............TA.............. TAAGTTTCAAGATAAGTTTAAGAAGATTGGTAG 111463 28 96.4 33 .............A.............. TGATCCGACTGAGGGCTTTGTAGTCGCTCGTAA 111402 28 92.9 33 .C...........A.............. TGATCCGACTGAGGGCTTTGTAGTCGCTCGTAA 111341 28 89.3 34 .C...........AT............. TGGTGTAACTGTCCCAGCTAAACATGATACACTT 111279 28 89.3 33 .............ATA............ CGCTGGTGCAAGTAGTTGGCTTGCTCAGGAAGC 111218 28 96.4 33 .............A.............. TAAGGTTTTCGTTGAGGAGCATAAGATGTACCG 111157 28 92.9 0 .............A............A. | C,TA [111130,111134] ========== ====== ====== ====== ============================ ================================== ================== 23 28 96.3 33 GTTTTTCCCGCACTCGCGGGGGTGATCC # Left flank : GAGAATGAACATACCATTATAGAAATTGGGGCACTTAAGGTTACTCCATCCACTACAGAAGAGTTTAATGCTCTTATCAAATATGACGGAATCTTGCCTACGAAGATTTCTAAATTAACGGGAATTTCTCAGACTCTATTAGAACAAAATGGTCGAAATTTAAAAGAAGTACTTTCCGATTTTTTGCTTTTTATAGGTGAATCAGCTTTAGTTGGCTATGGTATCAATTTTGATGTTAAGTTTATTAACAATGAGCTTAACAAGTTAGGCTTGCCTTTATTATCAAATAAAACTCATGATTTAAAGAAATTTGTCAAGAGTGAAAAACTATTTCTGGCTAACTATCAATTACAGACAGCTCTTAAGGAATATGGAATTGAAGAGGTAGTTCCTCATAGAGCTTTACCGGACGCTAAGTTAATCTATCAGTTATCAACAAAAGTGAATAAATTTTTGGATAGAATCAATCGGGATTAGCGATTTCAATGGGATCTTTTAGT # Right flank : ATAAAATGAGATATAAGAAAAATATCCCTATTGAAAACTGATAAATTAGAGATAGGAGTGTTTTATTATAGGAAAAAAACATATTTTGTGTAAATGAAGATATCTTAAATAACAAAGGAGAAGACAAGTAAATCGAATGAATTCATCATGTAGACATTTGGTAACAATAACATCAGTTGGGTAAAAAACTTTTAGAAGAGTATAAGGAAATTTGTCTTGTATCTGTTGTCTTAAAGTGTTTCAGAACTAAATGCTCAATATTTTTTGATTGGAAAAACGAGACTAAAATCCTTCTGCCAAATCCTTGGCTCTCCTGGCTGGTGCTAGTGAGACCGAGGTTGCTCCCCTGGTCGAGCGCCTCATCGCAGAGAAAACCTTTAACTTAGAGATAGCCCAGCGCTATCTAGAAAATTTACGATCATAAAAAAACTCAGATCAATTGGTCTGAGTTTTTTGTAGTTAAATACTTTTTCCAGGTAATAGGGTGACTGGTAAGAAGT # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACTCGCGGGGGTGATCC # Alternate repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6521-7017 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZPJ010000007.1 Streptococcus oralis strain CR140 Soralis_CR140_NinaOddballs_Sia_NO_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6521 36 100.0 30 .................................... TTCAGGGTAAAAAGTATGATAGTTTTTACT 6587 36 100.0 30 .................................... GAGGTGATTAGATGGCTTACTTAACTAAAG 6653 36 100.0 30 .................................... TAAAGCTGTGATTGAGGCATCAACCGCTGA 6719 36 100.0 30 .................................... AGAGTGAGAAAAGGATCTATCGAACTTGCA 6785 36 100.0 30 .................................... GCAAGTAACAGACAGCTGGACAGGCTTAAA 6851 36 100.0 30 .................................... GGGTGTTTGATTGTTCAGGTGTGGAAGTTC 6917 36 100.0 30 .................................... CCCTATCGGATTCTATCACTTTGCACGCTT 6983 35 88.9 0 ..........................A..-....CT | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.6 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTCAATGACAAACCAGAAGTCAAATCCATGATTGAAAAGTTAGTTGCTACGATTACAGAATTGCTAGCATTTGAGTGTTTGGAAAACGAACTAGACCTAGAGTACGATGAAATCACCATTCTAGAGTTGATCGATGCGTTAGGGGTCAAAGTGGAAACTCTAAGTGATACACCTTTTGAAAAGATGCTAGAAATTGTTCAGGTTTTCAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGACCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAGAGTCTTATTTGTTGAACCTCGAAAAGTCTATGATTTTCCGCAGTATGTGCTGGATCAAGACTATTTCTTGAATCCTGAAAATATGGTATAATAAGAGTAACAATTGGAATCAGACGAACTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : TTACATAAAAAGCTACTCAAAAAATGAGTAGCTTTTTAACTATTCCAACCCTACACATAGCTCATTCCTTTGTAGAAAAGGAAAACGGCCAATGCAATAAAAAGTACAGTGGCTCCGATTCTCTGGCTAGTACTATACATCCTTCTCTCCCCTTTGACTGGAAAGATGACTGCCAGAAAGGCCCCTCCTACTGCGCCACCGATATGCCCAGCTAGGCTGATTCCTGGGATCAGAACACTTCCAATGATATTTATCACGAAAAGTGTAAGATAGGATTGCCCCAACTGCTGGATATAGGGGTTGCGAGTTGCATAGCGCAAGACGATAATCGCAGCAAATAGTCCGTAAAGAGAAGTGGACGCTCCTGCTGCTAGGACTTTCGGTGTGAAAGCAAAAACAAAGAGATTGCCCATCATTCCTGATAAGAGATAGAGAAAAAAGAACTGTCTGGAGCCGAAAATCTCCTCCACCTGTCGTCCAAGAAAGTAGAGTGAAATCAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //