Array 1 14695-19679 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMAI01000004.1 Streptococcus equi subsp. zooepidemicus strain NVSLBI19 contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 14695 32 100.0 34 ................................ ACCCCCTTGTATAACAATCCACTCGGAAGCAGAT 14761 32 100.0 33 ................................ AAAGTGTTTAACACCCTCATCAATCGTTTTTGT 14826 32 100.0 33 ................................ TGTTCTTAAATGGGCAAGTCACTAAAAAACCAT 14891 32 100.0 33 ................................ TGTACTGCGGCCAAAACATGATGACCTGCTTGC 14956 32 100.0 33 ................................ TGGACTGACGCAAGCTCTGCCTCAGATTATCGC 15021 32 100.0 34 ................................ TCCTGCTTCGATTGTAACTTCCTCATCAGTTAGA 15087 32 100.0 34 ................................ AGATAATTCATCAACCTCAAACTGTGTTGTTGTT 15153 32 100.0 33 ................................ AAAAAGTTAGTTTGAAGTATGCGGTTCAAAAAG 15218 32 100.0 33 ................................ CTTTTTAATATGTCGAACTAAACCAGCCACTAT 15283 32 100.0 33 ................................ TGATTTGTTGTATCTCATTTTCTCCTACCTCTC 15348 32 100.0 34 ................................ TTTCCATGCTTTAGCAAAGTCCCCAGACGACATA 15414 32 100.0 35 ................................ CCCACGTCGACCGGTAGGGCCTGGTGGGCCCTGCT 15481 32 100.0 36 ................................ ATTTTTAATCTCTTCTTTTTTCTTTTGGAAAAATTC 15549 32 100.0 33 ................................ AGCTAGCCACGCAGTCTGTCTCTGGTTTTGCTC 15614 32 100.0 34 ................................ ATCCCATTTCTGTAGGTCGTTTTCCTCGATTAGT 15680 32 100.0 35 ................................ AATTTTCATTGCCTACTATCTCCAAATTTGATAAA 15747 32 100.0 33 ................................ CTGCTCGTGAGTGGAATCTGCGAGATAGCGGAA 15812 32 100.0 33 ................................ AAACAGGAGGAAGACTTGTCAGCTGACAATATC 15877 32 100.0 33 ................................ TAGAGAAACTAAACGAACATCTGATAAGCTATC 15942 32 100.0 33 ................................ ATAGTAAAGCATGGATGAATCTTGATCTTGAAA 16007 32 100.0 35 ................................ TAGGGGCTGCCTTACTTCCAAATATCTCTGCGGCA 16074 32 100.0 35 ................................ ATGAATTTGGCAAAGCCGTAAGTCAGATGGCTCTT 16141 32 100.0 35 ................................ AAGGGAAGTTTAGGGTCCATACTTGCGGTTGCATC 16208 32 100.0 33 ................................ TTAGCTTTTTTGAGCTCTGCGACATCATCTTCA 16273 32 100.0 34 ................................ CACTTGATTATTTTAATGATGAGGAAAAGGAACA 16339 32 100.0 35 ................................ ACCAACCAAGAGATTTTTGTTATAGCGGGTCTTAC 16406 32 100.0 36 ................................ ATTAGGTTGGTCTCAGTAAGTTTTAAACTTATGCCC 16474 32 100.0 35 ................................ TTATAAGTATGAGGATACCGATAAGAACTATGTTT 16541 32 100.0 34 ................................ AAGTGTGTCACCAACAACTGGTAGAGTTTGTATA 16607 32 100.0 34 ................................ TTATGTTCTTTGTTAGCAAGGGTAAAGGAACTAG 16673 32 100.0 33 ................................ AAGTTAAAGATAACAACTTGGTTATTGAGGTCT 16738 32 100.0 36 ................................ AACAGTTATCTTAATTCCAAAAACAGATAAAGAAAC 16806 32 100.0 35 ................................ CAATTATCTATTGCGTCGACATCGGGATCCATACC 16873 32 100.0 35 ................................ ATTCCATAGGCTGCGTTTTCGACAAAGCTAGGGGA 16940 32 100.0 35 ................................ ATCTGGCTTCCTTCAAATTTTTATTAATCTAAATC 17007 32 100.0 33 ................................ GTCTCGGACGTGTTCTTTGAGGTCTTTGGCAGC 17072 32 100.0 33 ................................ GCTCAGTTGGAGCGTGAACAAATAAAGGAACGT 17137 32 100.0 33 ................................ GACGATTATCGGGTGAGTGTCTTTGAGGTTGCT 17202 32 100.0 36 ................................ AATCGTCACGCCTAGTTTAATGTCGTGCGACAGGAC 17270 32 100.0 34 ................................ TGGACTTATCAAGAATGATTACCATTGCAAGCTT 17336 32 100.0 35 ................................ ATTACAGATGTTCCTGACAAGATGTCTACTTACTT 17403 32 100.0 34 ................................ GCATGACGCTTTCCTTGATTTTTCTCTGACCGAT 17469 32 100.0 35 ................................ TCGGTTCAGGGCGTAACCTACGCGGCAGCCGCAAG 17536 32 100.0 33 ................................ CTATTATTGCAAGCGCTATTGGCTCCATATTAC 17601 32 100.0 35 ................................ ATTCGGTTACCTCTCCTCTTAACACTTTTGACAGC 17668 32 100.0 34 ................................ ATTTTTAAAAATTTGTAATTCCATGTTATTTTCC 17734 32 100.0 34 ................................ TGACAGATTAAACAGCTTCATCATAGCTTTTTTC 17800 32 100.0 34 ................................ GCTCGTAGTGCTCGCTGCTATAGTCATGCCCGAT 17866 32 100.0 35 ................................ TCATCAAGAATATCCACCCAGATGTTGTAATACTT 17933 32 100.0 33 ................................ AAGCGCATGACCGCCGCCGAGTGGTCTCGTAGT 17998 32 100.0 35 ................................ GTTACAGGTTAATGTCAATAAACAAATGATGGTTA 18065 32 100.0 35 ................................ TAGAGTGAGAGATGAGTTGTAGATACTCGTTTAAT 18132 32 100.0 36 ................................ TAACGCTGTCCCTAATCCTGTAGCAGTCTTGAGCTT 18200 32 100.0 35 ................................ AGCAGCAGCAGGGAAGGTTAGGTGATATTAAATGA 18267 32 100.0 34 ................................ CTTATAGAGACGGTTCCCTCAGAGGGAGCTCGAG 18333 32 100.0 34 ................................ TTCATCTACTTCACCCCCTCTCTCCAGAACAGAT 18399 32 100.0 33 ................................ ATTTAACTACCTCCAGTATAGCTACAAAAATGC 18464 32 100.0 34 ................................ TTCCATGTCTTCGCCAAAACGTTCCCAAGCTTCT 18530 32 100.0 37 ................................ GGTGTGCTGACCTGGTGCAAAAAGATAAATAGAGTTG 18599 32 100.0 34 ................................ AATTGGGACACCTGCTATCTGCCCTTGGGTGGCG 18665 32 100.0 33 ................................ ATAATTTTAAAGTAGAGTATTCACCTGTGTTAG 18730 32 100.0 34 ................................ ACACTATCCATAAGGTTAGGTACAATCTGTTGCG 18796 32 100.0 35 ................................ TTTTAGTCGACTATAAAACTTTTAGTAAAGCCCCA 18863 32 100.0 33 ................................ AAAATGAGTTGTTCGCAAGTGTTTCTTTCTGCT 18928 32 100.0 34 ................................ TATTGAGTGCTAAAAAGGAGATAATTAATGGCAA 18994 32 100.0 34 ................................ CTTGGGGTTATGGTTATAAGACCCCGCACTATTG 19060 32 100.0 33 ................................ TTGTTGTTTTAAATATTGAATCTCATTTTCCGT 19125 32 100.0 33 ................................ ACAACGAGTGAATGACCATCGATAGCTTCATCC 19190 32 100.0 34 ................................ AGGTTTTTGGTTGGTCTTTTTAGCCCCTTTTGGC 19256 32 100.0 33 ................................ TATGTGTCAGGCTATTTCTTGTATTATTACTTA 19321 32 100.0 34 ................................ ATCAAGAGCTTTTAACTGTGCATTAGATAGCCTA 19387 32 100.0 34 ................................ TCAAAGCAGATGATGGTGTCTTTTGTAAACGATA 19453 32 100.0 33 ................................ TAAGATGATGAATCGTGCAGGTTCATCTTTTTG 19518 32 100.0 34 ................................ TGACAACAATGTGCAAAACACAATAACTTGACCT 19584 32 90.6 32 .....................T........TA TGCGATACGTGACTTTACGATGTTGCGACTCC 19648 32 68.8 0 ........C..TG....T.C.T..T.C.T.T. | ========== ====== ====== ====== ================================ ===================================== ================== 76 32 99.5 34 GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT # Left flank : AAGGCTATTCGAGGGGATATTGATAGTTACCCACCTTTTATGATTTAGGAGACTGGTTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCAGCAGGGCGAAAACGACTACGTCAGGTAGCAAAGTTATGTGTTGATTATGGCCAGCGTGTGCAGCATTCAGTATTTGAGTGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACGGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCATTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGCGAGTGCGAGCCTGGATCACTCATAAAATGCTGGGAGGCTCGCGCTAAAATAAGCTAAAAAATGGAGAAATGAGGGGTTATAGCTGAATATGTTAGTAGCTAGCCTATATCATTTCTCTATAAACTGTGCTATATTGCGCA # Right flank : TCTTTGTTTTTCATGAAGGGGTAAATCATATTGTATTCATCAAGCTGATTTATGCTTTTTATGGTGCTATGTCAAATAGATAAAAACCAATCTGAGGTTGTTGAACAGGATTGGTTTTTTCTTGTGATTGCAGATCAGACTTTTCAAAAGAACAAGCACATTATCTCAGCTAGACTGGTGCTTGATAGCTCCTGAGCCCTTGTTTGCTGTAGTTGATAGGACTTTGCTGATGGCCTAGTCAGGCATATCGTATCAAATTCAAGTTTTTTCATGTCACTGTCTATAGTTTGTCCGCCCTACTTTAGGTAGAATAGAGGTAACTTAAGAGAGGAGTTTATTATGGAATTAACGATGCTTTTGATGGTTTCAGTTTTCATTGCAGGGCTGTTATCATTCTTTTCCCCTTGTATCTTTCCAGTTCTGCCGGTGTATTTAGGCATTTTGTTAGATTCTGATGATTCTAGGTCTATTACTATTTTTGGCAAGAAACTATATTGGTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //