Array 1 61267-60106 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSTA010000023.1 Streptococcus thermophilus strain B4 Contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 61266 36 100.0 30 .................................... AGTAATATCAAAAAAGCCCCCTTGATTATC 61200 36 100.0 30 .................................... TTGTGTTCGTTTAGGTGTGTACCATAGAAA 61134 36 100.0 30 .................................... AACGGCCTATGCTTAATAAAACAACTTAAA 61068 36 100.0 30 .................................... GAATGGCTTGTCTATTTTTGGGCTTTTGTG 61002 36 100.0 30 .................................... CGTTAGCAGTTTCAATCCGTAGCCACACCT 60936 36 100.0 30 .................................... CTCAATCTAATAAATGGATTCGGAAAGACC 60870 36 100.0 31 .................................... CTAGAGGTGACCAAGGTGTACCTGGACCTAA 60803 36 100.0 30 .................................... CTTCTTAAAATTGAATAATTCGAAGTACAT 60737 36 100.0 30 .................................... TTCTAAGTCAAAAGAATATGATGCTAGTGG 60671 36 100.0 30 .................................... GGTGGCGCTACACATACACTACGCTACGCT 60605 36 100.0 30 .................................... TTTTGCTAGGATATGTCCGAACGTCGATAC 60539 36 100.0 30 .................................... TAAAACGCCCGTAGCACGATTTTATTGCAT 60473 36 100.0 30 .................................... AAGCTAAGTAAGCTATATTTTGACCGTTAT 60407 36 100.0 31 .................................... CTTAGCCTTGAAATGGCACGTAGTGAACTTA 60340 36 100.0 31 .................................... CGGACAGCGATAAATACACTCTATACAGAGA 60273 36 100.0 30 .................................... TAAATAATAAAGTTTTCTACCAAGATAATT 60207 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 60141 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 124846-125211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSTA010000008.1 Streptococcus thermophilus strain B4 Contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 124846 36 100.0 30 .................................... TCTTTCTATAGCATAATTGTTAGTTGTCCT 124912 36 100.0 30 .................................... GAAAGAATCGGTCTTCTAGATGGATTCCAA 124978 36 100.0 30 .................................... TAGGAAATTCATACCCTGCAGATATATCAT 125044 36 100.0 30 .................................... AACGATAAAAAAGAAGAAGCTTTCACGCCT 125110 36 100.0 30 .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 125176 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : GCTTGGAGGCGTCAATGTTCGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 24-2103 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSTA010000009.1 Streptococcus thermophilus strain B4 Contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24 36 100.0 30 .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 90 36 100.0 30 .................................... ACCTGTCATCTCTGGGAGTTAAATTTCCTT 156 36 100.0 30 .................................... ATTAGCACGAGCCTCTGTATACTGTTCTTT 222 36 100.0 30 .................................... TTTGGTCTGGTGCGCCTTTTATATTGAATT 288 36 100.0 29 .................................... GGTTCCCTATGAGCAAAGGACAACGCTTT 353 36 100.0 30 .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 419 36 100.0 30 .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 485 36 100.0 30 .................................... ACATTGAGTAAGTCAATAGTTTGCGATGGC 551 36 100.0 30 .................................... TAGAATAAGTGAATGGGAAACTGACGGAAC 617 36 100.0 30 .................................... ACATAGAAGGCTAAGCAATCAAGCAAAAGA 683 36 100.0 30 .................................... ACGACATCAAGCTGATTATCTTCTACATAC 749 36 100.0 30 .................................... CTGTCTAACATAGTCCCAAACTTTATCATA 815 36 100.0 30 .................................... CTAAAAACGGTGTTCTATATCGAGGTCAAC 881 36 100.0 30 .................................... TGTTTCCATCCGTGGTGAAATGGTAGAAGT 947 36 100.0 30 .................................... TTGAGCATTTACTTACTAATTTCAAACGGT 1013 36 100.0 30 .................................... AGATGACCTATAATATAATCAAAATCACCT 1079 36 100.0 30 .................................... TCTATCTTAGGCGGTGGACTGATGACGTTA 1145 36 100.0 30 .................................... GATAGATATATATATTATATCACAATCCTA 1211 36 100.0 30 .................................... TTATAGTATATCTAATGTGTTCCCGTTTGT 1277 36 100.0 30 .................................... TTGAAATTTATAATATGGATGTCGATGATG 1343 36 100.0 30 .................................... TCTAGAGACCTCTTCGTGTTGTCACAACCT 1409 36 100.0 29 .................................... GCTCTTTCCTACTCCTGTGTCTCCTATTA 1474 36 100.0 30 .................................... GTTTATCACTTATTTGATATACACTTATAA 1540 36 100.0 30 .................................... ATATCGGTGGTGGTGCGTTTGAAACTGACA 1606 36 100.0 30 .................................... GACCCACGGATACCGCCAAAACAGCACGTG 1672 36 100.0 30 .................................... GAAGTGATAGACGTTGTTAACTCATCAGCA 1738 36 100.0 30 .................................... TTTCTGTGTACTCCATCGGCTTTTGAGTGT 1804 36 100.0 30 .................................... GCTTTGCGAGTAACGCCGGTTGCTTTTCCT 1870 36 100.0 30 .................................... TTGGCATCAGTGAATTTGATGCCTGGAAGT 1936 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 2002 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 2068 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 32 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TAAGCCGTGTATTTTGCTAGGTAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //