Array 1 2215510-2214010 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031328.1 Neisseria meningitidis strain M18755 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 2215509 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 2215443 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 2215377 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 2215311 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 2215245 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 2215179 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 2215101 36 100.0 30 .................................... GGTCAGATTACAACAACGTTGAGCGTGTGT 2215035 36 100.0 30 .................................... TCTTTTGACAACAATTTCACTGGCGAAATG 2214969 36 100.0 30 .................................... GCCTAGTTCCGGATTGTCAATCATCCCAGC 2214903 36 100.0 30 .................................... TGGATTTTGCCGCCGACGCAGAAAGCTGCA 2214837 36 100.0 30 .................................... AAATCGGAATATTTCGTCAGCGTTCAAGAG 2214771 36 100.0 30 .................................... TCTGTGCGTTTGGATGCGGATGAGGCGGGA 2214705 36 100.0 30 .................................... TCATTAAATGATGTATCACAAGCACTTTTT 2214639 36 100.0 30 .................................... AACCGTCTGCACCGTAAATGTAATCAACTT 2214573 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 2214507 36 100.0 30 .................................... GTGCGTAGTCGTATTGACGCTCGTGCTGAC 2214441 36 100.0 30 .................................... TGTTGTTGCAGGTCGATGGTTAGGGGTTCT 2214375 36 100.0 30 .................................... TCCCTTAACCTGAAACGGAGTAATTAAAAT 2214309 36 100.0 30 .................................... ACCATGGTAATGATACAATCTATCATATGG 2214243 36 100.0 30 .................................... TTTATGCCTGAATTCAACGCATCTTCGTAA 2214177 36 100.0 30 .................................... ACGACAAAGACGAACTGACGGACAAATACG 2214111 36 100.0 30 .................................... CAGCAGCGACAGCAAAAGTTTTTTCTCGCT 2214045 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 23 36 99.9 31 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //