Array 1 477209-478395 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBPD01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain NY_FSL S10-880 NODE_2_length_712760_cov_24.3426_ID_3410, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 477209 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 477270 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 477331 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 477392 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 477453 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 477514 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 477575 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 477636 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 477697 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 477758 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 477819 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 477880 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 477941 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 478002 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 478063 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 478124 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 478185 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 478246 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 478307 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 478368 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 494566-496062 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBPD01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain NY_FSL S10-880 NODE_2_length_712760_cov_24.3426_ID_3410, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 494566 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 494627 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 494688 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 494749 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 494810 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 494871 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 494932 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 494993 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 495054 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 495116 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 495178 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 495239 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 495300 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 495361 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 495422 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 495483 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 495544 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 495605 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 495667 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 495728 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 495789 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 495850 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 495911 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 495972 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 496033 29 93.1 0 A..............A............. | A [496059] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //