Array 1 101005-101830 **** Predicted by CRISPRDetect 2.4 *** >NZ_CVUM01000112.1 Pseudomonas aeruginosa strain P40_Scotland_4_VIM_2_09_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 101005 29 100.0 32 ............................. TCCTAGGTACAGCAGCACTGCCAGCACTGCAC 101066 29 100.0 32 ............................. GAATGTGTACGACGATGCTGACGAGAATGGCA 101127 29 100.0 32 ............................. GGTGCTGAACGGCACGCTACCTACGTCAACTC 101188 29 100.0 32 ............................. ATGGTCCAAGAGCATGGTCAGGAGAGCCAGCC 101249 29 100.0 33 ............................. GAGGCATACGACGACGACGCGCAGGCCGCAGCC 101311 29 100.0 33 ............................. TCAGCCAGGCTAGCCCGCTGGCAGCTGCTCACC 101373 29 100.0 31 ............................. AGAAAGCCGAGGAATCACCGAACCCGATTCC 101433 29 96.6 32 T............................ GTCGCCAGCTCGGAACGTGCCTGCTCGATCTG 101494 29 93.1 33 .....T...............G....... TACTCATCGGACAACGTAATGGCTCCCGGCCAA 101556 29 82.8 32 ......T....A.......A.G...T... GATCGGCCCGCCTCGGAAGCTGCCCAGCTTTC 101617 29 82.8 32 ......T....A.......A.G...G... ATCACGACCTGCCTGAAGGCTGGGTCATCAAT 101678 29 82.8 33 .......T....C...T....A...T... GACGGTGCGCAAGAAGGTCACCCGGCAATTACG 101740 29 86.2 32 ...........CC........G...T... GAAACAACTGCATTGTTCAGAGCATCGGAACC 101801 29 75.9 0 .C.A...GT....T...T..........A | A [101818] ========== ====== ====== ====== ============================= ================================= ================== 14 29 92.9 32 GTGTTCCCCGCGTATGCGGGGTTGAACGG # Left flank : GCTGATTGCTTCCCAGAATTGGATGCAGACCAGTCGAATCAACACCACCGAGGCAGCACGGCACCGCAGCGAAGGACTTCTTCTACTACGGGCCGCGAAACCTAACCCTGCTGGAGGACCATTCAAGAACTCGCTCTACCATCTCCCCCTAGCCTGGGCGACCCTCACCGCATACTGCGTCGGTGATCAGGCTCGGATCGCCAAACTACTTTCGCAGTGTCGCCAGGTCGGTGGACGCCGTGGTGTAGGCTGCGGCCGCGTAGCCGGCTTCGCTGTTGAGATCGTGCCAGAAGAAGAATGTGCCTGGGCTTGGCGGGCAATGCCAGAAGACAGCGATGAAATCTGTCTCTTTGGAGAGTACGCACTGGCTATGTCTTCACTCAAAAGCCCGTATTGGGATCGCACGCTGCATCAGCCAGTTTTGATTCCTACCAAGTAATAGCTCCCAACGAAACCACTATATATGGTGGCTTGTGGGCACTAAGCGCCAATATACAAGT # Right flank : AAAAATCCGAAACTCTAAGGAGACCTCAAAATGAATAGCCTAAATTTTTCCCTCATCATCTCCGGCACTGTCCGCCCCTGTGCTGATGATGAAAGTGCAAACGATTCAGCTGTGGCCCGCAGCAAACTATCGGTACGTTTGGAGCAAGCTGTTGCAGAAATCACCGGCAGTAGCCTACTCACGGGCGAAACATTCGCCACCCTGAACGACTACTCTCACTGCATTCGAGTGACCAGTGGGCGATTCGATATGATGTCCATCCCTATCATATCCACCGCGCACCTCGACCAGGCCACCGCGATCACTCTGAGAGAGAACGGTGGAAAATGCGACTGGGCAGTCGTAGCGTGCTACCCAGACGGAATGTTTATTCGCTTTCTGAACGAGGATGGCCTTGATGCCAAAGTACCTGAGAGCGCCAGGAACATTCGTCAGTGGCTCAAGTCTCAGGGGCTCACTGGCTGGGTTCGACTGGATCAGGACTGGGATTGTGTCGAAGG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGTTGAACGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //