Array 1 11419-14438 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWG010000021.1 Erwinia amylovora strain Ea02-03 Ea_02-03_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11419 29 100.0 32 ............................. GATGTTTTCCCATAGAGTTCTGAGGAAGACAT 11480 29 100.0 32 ............................. CCACCCCACATTGTGGCGCATGTGGGCGCAAA 11541 29 100.0 32 ............................. GTGACATTCCGCATGGCGCGTGATGCCATCAG 11602 29 100.0 32 ............................. AATCTCGCCAAAGAGCTTGGTTGCGTTGTAGT 11663 29 100.0 32 ............................. AAACTTATCTTGTTGAGCAGCATTGCCGTTCG 11724 29 100.0 32 ............................. TCGTGCACTGCGCGTAAAGCTCCTTTAGCGGC 11785 29 100.0 32 ............................. CAATGGAACGCTACGGCATTCAGAAGCTTAAC 11846 29 100.0 32 ............................. TTGTCTTTGATTCCCGGCAGCATGCAATTGAT 11907 29 100.0 32 ............................. TAAAAAAACGACCCAGAAAACCCTCTGTTTGT 11968 29 100.0 32 ............................. GGGGTTGCATGAGCAAACTTACTGACAATCTG 12029 29 100.0 32 ............................. ACAACGTTTCAGGCTGCATTAACTTCATTTTG 12090 29 100.0 32 ............................. CTCCAGCCTTACATTTTGCCAACCCTTTAGCA 12151 29 100.0 32 ............................. GTAAACCGTGATTTAGAGGGTTTCCTGATTGT 12212 29 100.0 32 ............................. CCGATAATGAAATAATTTATGCCGATGTTAAC 12273 29 100.0 32 ............................. CTGCAGCCGCCCACTAAAACGGGGATCAGCAT 12334 29 100.0 32 ............................. GTTCTTACTTCGGATTAACTTAATAACGCTCT 12395 29 100.0 32 ............................. AGAATCCCACGATGGACTCGGACAGGCCCGCA 12456 29 100.0 33 ............................. CCGATGCCCTATGGTCACCCAAAAATAGACGGT 12518 29 100.0 32 ............................. ACGCGGGTTACAGTGACCTCGGCGCAGCAATG 12579 29 100.0 32 ............................. TGGTTGGGCGATGTGAATGGACGTTTGAGCCG 12640 29 100.0 32 ............................. CAATTGATCGGCTATCAGGCAGAGATCGCCAG 12701 29 100.0 32 ............................. TTAGCGCCCTTCTAAGCCGTAGGTCACAGGTT 12762 29 100.0 32 ............................. TCGACCCCGCCTCTAACGCCCCGCCAGATTTT 12823 29 100.0 32 ............................. GCCAACGGAAAATGTTGCTACTCGATCTTTGT 12884 29 100.0 32 ............................. ACAATCCATCTGGTACCGCGGCTAATGCCCAA 12945 29 100.0 32 ............................. GAGTGGTGCACGAGCCGCCGCAGTCCTTGCTT 13006 29 100.0 32 ............................. ACGCCATGCATCGCGTTTATTTCAACGTCCGC 13067 29 100.0 32 ............................. CCGCTCAATCAGCGGCGGGGATCGTCACGATA 13128 29 100.0 32 ............................. TTGTCAGTTGCAAACATCAACAGCTCAATTAC 13189 29 100.0 32 ............................. TCCACCAAGAGGAAATTAGAGCTATCCAAGAT 13250 29 100.0 33 ............................. CGGTCAATTTTCCTGCTCAATGTCAGTTTTCAA 13312 29 100.0 32 ............................. GTATCGCTGCGCAGTGACCAGTTGTGCTTTTT 13373 29 100.0 32 ............................. GCTGAAATCAATAACATCTCCTGGATTTACAG 13434 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACTGGGCTG 13495 29 100.0 32 ............................. CTTTGCCAGGCCTGTGTTTGCCCTGGGAATTT 13556 29 100.0 32 ............................. GAACCATAGAGCCGGGAGATCTAATTTTCGTA 13617 29 100.0 32 ............................. TCATCGCGCCGGTAATTCGTCATCTCATGAGG 13678 29 100.0 32 ............................. AATTGAGCTTTCAACGATTGCAGTCCCCGCGA 13739 29 100.0 32 ............................. TTCACAGACTGCTTTCTGCTTGCGGCTATATT 13800 29 100.0 32 ............................. CATCCATCGGCAGTTGCGGCTGATATATTTGA 13861 29 100.0 32 ............................. CGCTACTGTGTGGTCTCATACCCTCACCAACA 13922 29 100.0 32 ............................. TATGTCCCTATGGGATGTGTTGCTTCGGATTC 13983 29 100.0 32 ............................. GGATGAAATTTGATGCCTGGGTGAAAATGATA 14044 29 100.0 32 ............................. CCTGCGTGAGTCAGCGAGTCAAAAGGGGCTTT 14105 29 100.0 32 ............................. GTTCCCGGCGCTTCGCCACTCTGCCACCACTC 14166 29 100.0 32 ............................. TCGGCTATGCCGTGGGGTGAATGATGGAATTT 14227 29 100.0 32 ............................. GCAAAAAAACATGACTGCATATCTGTATCGGA 14288 29 100.0 32 ............................. TCCAGAAGGGCATAACCTGCATTAACCCGCGA 14349 29 100.0 32 ............................. AGCAGTACAACATGTTCGGCTCGGCAATTAAT 14410 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 50 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGCCCACGAAAAAGGCAGGGGCGGTTAACTCCTTGCCTTATTCGAGTGACTTCAACCCTTACGGGCGTCCGGTCGGTTGCTCAATGGCAACGATAATCAGCGAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCAATAGTATTTCCTTGATATAAGAGCGTGCGCGCAGCATGTGGATGCTTTTGGGCTACTCTTGGCGGCCGCGTACCGGTCGACAAAAACCAACCCGGTTTACAGGCCGGTTTTTTTTTCGCCTGCACGCTGCCATTTCCGCTATATTCAAGATGTTCACTAAGCCGTTTACCCCTTATATCTGGCCGTGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAGAGTGGAAAAAAGTTGGTAGAATTGTAAGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCAATTGTACTGGTCTGTCGCTCAACCATGTCACCGATGCAGAGGTGTCTCCAACACTCATGGGCCGGAGAAACCAATGCATACCCCACTGACGGAGCTTATGACATCCGGTTGGGGCATGATCAACGGGGGCATACGATAATCAGATTTGTCCCCCTTCCCGGCTTACTGGCAAGAAGAATATGCAGATGCACCGGGCGCTAAATAGCCGTTCAAAATAGTAGATCACTTTGAGGGCACACAACCCGGATTATGCGATCTTATCAATCGCTGAATATCCCAAATCACCAACCGGACTGAGCGATGCCGTTCATAGCATCAATACCTCGTAGCAAACGCCGCCGGATGCAGAAAACCCTTCACAAAACCCGGGATAAAAATCATGCTCGCAGGCTTACCGCCATGCTGATGCTGCATCGTGGAGACCGCGTCAGCAACGTTGCCAGAACAGCTTTGCTGGGGCCGTTGTTCCATTGGCCATTAGATTAACTGGTTTACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 44203-46427 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWG010000021.1 Erwinia amylovora strain Ea02-03 Ea_02-03_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44203 29 100.0 32 ............................. GGCGGGGTATCTGCGGCGTGCCGAGAATGTAA 44264 29 100.0 32 ............................. ATTGCCAGCCCACTCACCAAGAAGCCTGCCTT 44325 29 100.0 32 ............................. TAACCGCCTGCGGGCAGGCCCCGTTTCGTTTC 44386 29 100.0 32 ............................. GTCATATTCAAGGCGAAGTGATGTCGGCCAGT 44447 29 100.0 32 ............................. GATCTCGACTGATTGCATACCCTGACGGCGGC 44508 29 100.0 33 ............................. AAAACTGCCCGCTTGTTGGACCTACACGGAACC 44570 29 100.0 33 ............................. CCAGAAAATGAAAGGGCAGCAACGGCGCAGGAG 44632 29 100.0 32 ............................. TAGGTTAGGTGGGGGAGGGGGTTATACAATCA 44693 29 100.0 32 ............................. AATTAATGCGGATCGATTTTATTAGTTCATCT 44754 29 100.0 32 ............................. CTAATCCTGTTCGAAATTATCAACACACGGTA 44815 29 100.0 32 ............................. TGGTCATCGAGGATGGTTTATTACTCGCAAGA 44876 29 100.0 32 ............................. CTCGAGTCCGGCAAACTCCAGCAGTTCGCGGA 44937 29 100.0 32 ............................. TCATTACCCGCACAGCCAGATAGGGCAAAGAA 44998 29 100.0 32 ............................. CCCGAGCACGCGCCAGTAATTTATATTACGGA 45059 29 100.0 32 ............................. ATGATTGCAACAATGAAAGACAAAGACGAAAG 45120 29 100.0 32 ............................. CAACAAGCGCAGTGATTGCCTGTGAGTCGAGA 45181 29 100.0 32 ............................. CCATCGCCTGAAAAGTACGATGTTATCGATCA 45242 29 100.0 32 ............................. GATTCAATAAATGTTCGTATATTCCAAATCAA 45303 29 100.0 32 ............................. ATCGTCTGCTAGTTATCAGTGACAATCAAAAC 45364 29 100.0 32 ............................. GCAATAATACCCGGTAGGTGTGGGGTGATGGT 45425 29 100.0 32 ............................. TCTTTGATGAAATGCTCCGGGGGCATCTGCCC 45486 29 100.0 32 ............................. CATCTGAATTTAGTTACAGCATTCAAAATACG 45547 29 100.0 32 ............................. AAATGGCTAACGCTTTGCGTCAGTTTGGGCAA 45608 29 100.0 32 ............................. GCCGCCGACAACGCTGTTAAGGATGGTCGTAC 45669 29 100.0 32 ............................. GAGATAAACAGATTTGGTTTCTTGCTCTTTGG 45730 29 100.0 32 ............................. CCTGGGGCTGGCATTGCGGTCATACAATAACA 45791 29 100.0 32 ............................. CTGCATAGAGGCCACCCACCACGGCTCGGCAA 45852 29 100.0 32 ............................. TGAGCCGTGACGATGGAGAAACAGACGTTTTT 45913 29 100.0 32 ............................. GACGTTTCTGGAACCTGTTCCGCACAAAGACG 45974 29 100.0 32 ............................. GTGGGTGGGGCAGAGTTTGCGAGCATATCTCC 46035 29 100.0 32 ............................. GAACCTGCTTGCGGTCAAATACACGCTTCCAG 46096 29 100.0 32 ............................. CCGTGCGAATGCTGTAACGGCGAGGGATTCAT 46157 29 100.0 32 ............................. TCAAAAATCTCGAATTGCTCGGTAAACACGTT 46218 29 100.0 32 ............................. GTGCTGATGGAAACCATCGAGAAGGCCGGGGC 46279 29 96.6 32 ................A............ GATATTACGTGTACGCACAGCCGCTGGCCAGT 46340 29 100.0 31 ............................. CAGAGCGGGTCAGATTCAGGGATGTATGTCA 46400 28 79.3 0 ...........AC..-A....C......A | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.3 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATTGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCAGGATACCCAGCCGGTTGCCATCCCTGAACCTCAGTCTCTTGGCGATGTCGGGCACCGGAGTTCGTAATATGAGTATGCTGGTAGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTGAATCAGCTCTACGAGAATGGCAATGTGGCGATGGTATGGGCCACCAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGTCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCGGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATGATATGTTTAATGCCAGCCCGGCCTCGGTATTGCCTCGCCGGACTGAGCCTGAATACATTACCGGCAAAAGAGGGTAACACTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGGCTGGTCGAATATCGCCCTGGGTGCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTAAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAATCCCTCTTTGGCTGGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 55892-56279 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWG010000021.1 Erwinia amylovora strain Ea02-03 Ea_02-03_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55892 28 89.3 31 ......C...........G........T TTACGTTTGCGTTAACAGTAAGCTCTGCAAC 55951 28 100.0 32 ............................ GGCTAAATGCCTGAATTCAACGTTCTACAAAA 56011 28 92.9 32 ......C...........G......... ATCGCACCCCACTGATTGAAGAGCAGCACACT 56071 28 92.9 32 ......C.................T... GAGCAATATATTCGATAGACGCTGATTTGCGT 56131 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 56191 28 100.0 33 ............................ GCCAACGTTCACTGTCATTTAGCCACGCTTCGG 56252 28 75.0 0 .....A........G....TT...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 92.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGCGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCACCAGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGATTGGCGTTATAGGATGGTTGTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTAAATGCGATAAGCCAGTTAGCGTAGTAATGTAACG # Right flank : ATGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCATCACGGGCTTCTCATCCTGTGGACATTACGCTGAAAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGTTTAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAATCGCGGGTTTTTCACGGTTTTTTTACAATAAATAAAGAAAGATCTTATTTTTTTCTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTAAAATTTTTTTGCTCAATAATTTCCAGAACTTTCATTTTGAGTTGGCTACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGAATTTAATGAAATGCAA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACCGCCGTACAGGCGGCTTAGAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //