Array 1 243550-241884 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKYL01000035.1 Salmonella enterica subsp. enterica serovar Heidelberg str. RI-11-013988 SEEH3988_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 243549 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 243488 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 243427 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 243366 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 243299 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 243238 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 243177 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 243116 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 243055 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 242994 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242933 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 242872 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 242811 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 242750 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242689 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 242628 29 100.0 33 ............................. TGGATTATCTGTACTTTTACGGAAGTGGGCGCG 242566 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 242505 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 242444 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT G [242422] 242382 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [242341] 242340 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 242279 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 242218 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 242157 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 242096 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 242035 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241974 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241913 29 96.6 0 A............................ | A [241886] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260079-259807 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKYL01000035.1 Salmonella enterica subsp. enterica serovar Heidelberg str. RI-11-013988 SEEH3988_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 260078 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 260017 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 259956 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 259895 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 259834 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 700-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKYL01000036.1 Salmonella enterica subsp. enterica serovar Heidelberg str. RI-11-013988 SEEH3988_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 699 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 638 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 577 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 516 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 455 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 394 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 333 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 272 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 211 29 100.0 31 ............................. AACAGGAACAGGAAAAAAAGATTTGTCCGGT 151 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 90 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 29 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : G # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //