Array 1 16185-17330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUK01000010.1 Salmonella enterica subsp. enterica serovar Kentucky strain CVM N29383 N29383_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 16185 29 100.0 32 ............................. CGCCCCTCACCACCGTGGCCGCGTGCCGTTCG 16246 29 100.0 32 ............................. GCAACTATGTTTAACGCGGCCAATAACGATTT 16307 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 16368 29 100.0 32 ............................. ATTTTCCTCTTGATCCGACTGATAAAACAAAC 16429 29 100.0 32 ............................. CCAGTCTGTATGAGGCTGCGATTGTGTGTTTT 16490 29 100.0 32 ............................. CCTGTAAAACTGATTTCAGGCTGGTTAGTGAC 16551 29 100.0 32 ............................. TAACGCCCGGCGGTATAGTCGATTTCGTGCTG 16612 29 100.0 32 ............................. ATTTATCCATTAGTCCCATAGCTGAGTCTCTT 16673 29 100.0 32 ............................. TCAACGTTACGACCGAACCACACCGATAAGAA 16734 29 100.0 32 ............................. GCACGGGTACGCCGAAAATCGGGGGCTATGCC 16795 29 100.0 32 ............................. GGGATCGGCGAGTCGTTCGTGTTTGCTATTTC 16856 29 100.0 32 ............................. GTCAACGCCAATGACCGGGAATTATCCCGGAA 16917 29 100.0 50 ............................. TTTCCGCTCTCTCTCGTCCATCATTCCGCGCCGGCATAACTGACGATCAG 16996 29 100.0 32 ............................. CTGGTCCCGCGTGTATACCAGTATTTACCGTG 17057 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 17118 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 17179 29 96.6 32 ..........T.................. GCGTATGAGCGCCCAGCAGCGAACGTGAATCT 17240 29 100.0 32 ............................. CCGCTTTGCTGGCAACATTCACCACATAGCAT 17301 29 96.6 0 ............T................ | A [17328] ========== ====== ====== ====== ============================= ================================================== ================== 19 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTAGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20026-21152 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUK01000035.1 Salmonella enterica subsp. enterica serovar Kentucky strain CVM N29383 N29383_contig_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20026 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 20087 29 100.0 32 ............................. CGCTTGGCGGTTATCATGGCCGGTAATGACTC 20148 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 20209 29 100.0 32 ............................. CGGGGATTAGCTCTAAAAATATTTTTATTTTG 20270 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 20331 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 20392 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 20453 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 20514 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 20575 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 20636 29 100.0 32 ............................. CAGCAGGACGACGACCCGCGCCCCCGCGTCGG 20697 29 93.1 32 A...........T................ GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 20758 29 89.7 32 A...C.......T................ CGGACATTGTTCGTGAGCGAGCTGTTGTTCGT 20819 29 93.1 32 A...........T................ ACGGGTTAGCGCCTGCGGATAATGCCCAGCAC 20880 29 89.7 32 A...........T........G....... GTGGCAATGGTATCGCTATACGAAAGCGACGT 20941 29 96.6 32 .......T..................... TTCGTGTATTTTGAGTCGTTTACCGTATCTGC 21002 29 100.0 32 ............................. CGCGCCGCACGTTCGGTAGCGTGGCTGAGTTA 21063 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 21124 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GCAACAGTGCTGGTGGAATTAAAAACACCGACGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //