Array 1 1460457-1455526 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALNF010000001.1 Clostridium perfringens strain CP-08 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================================================================================================================================================================== ================== 1460456 29 100.0 34 ............................. ATAGAAGCTACAATAAGAATTGAGTTAAATGGTC 1460393 29 100.0 36 ............................. GTTGAAACACCTTTAGATGAAAGCATAGCCCTAAAA 1460328 29 100.0 36 ............................. ATTCTAAGGCTAACATTAGAAGAGGTTTAGAAGGGC 1460263 29 100.0 36 ............................. TTCAAGAATATCAATATAAAACTATAATGGAAACTT 1460198 29 100.0 36 ............................. CAACCAATACAACAAGTTCAACAACCTCAATTCCCT 1460133 29 100.0 36 ............................. TAATTTAAAATATATTTATGAACATCTATAAAACGA 1460068 29 100.0 36 ............................. TTAGAGTTAATAAAACAATAACCCCAACCAACACCA 1460003 29 100.0 36 ............................. TTGTAGCTAACCAAGATTTCTGAATCTTCAATCCTT 1459938 29 100.0 37 ............................. CTGAGATGTTAGGTCTTAAATGTCCTAACCAAGTTTC 1459872 29 100.0 37 ............................. AAAAAGAAAGAATTGTAGGCAGAAAATATACAGAATA 1459806 29 100.0 36 ............................. CAATATAAAGAGGAATGTTTAAACAGACTGATATCA 1459741 29 100.0 37 ............................. ACATATTAGCTTTTATAGCAACGTTAGTTAAACTACC 1459675 29 100.0 36 ............................. TAGAATTGGTTAATCTTAAAGATAAAGAACGTTTAG 1459610 29 100.0 36 ............................. TATAAACTACGGTAAAAAAGAAGCGTATTTCGGCAC 1459545 29 100.0 37 ............................. TTCTAATCAATTAGGAAGAATGCAAGACCAAAATACA 1459479 29 100.0 36 ............................. ATTGTAGAGAGTGAATTAATCAATAATTATAGTAGT 1459414 29 100.0 37 ............................. CTATATAGACGCGGTTAGGTATGCTATAATGGATATA 1459348 29 100.0 36 ............................. TAACAACGACTTTTCTCTTGCCATAAACTCAAATAA 1459283 29 100.0 36 ............................. AAGTTTCATATCATAATCACTAACAACACATTTATT 1459218 29 100.0 36 ............................. TGGATATGGATGGAATTAAGATTAAGGTTAAAGCAG 1459153 29 100.0 36 ............................. TTCGCAAAAATTGACGATACTTTACAAGGTAGACCA 1459088 29 100.0 36 ............................. TTGTAGATATGTTGAAGAAGTACAGAAATGATAATC 1459023 29 100.0 37 ............................. TTTGGTAAGCTAATCTTTTCTGCATTTTTATAAATAT 1458957 29 100.0 36 ............................. CTAACTAATGCAGTTAAATTTGTTACAGATGGTATT 1458892 29 100.0 37 ............................. TACTTCTTTGAGTGAAGAAAAGCCGAAGAAAAGAACT 1458826 29 100.0 36 ............................. CAACAAATTCAAGAAACAATTATGAATATTGCTAAA 1458761 29 100.0 37 ............................. CAGTTAAGGCAAACACAAGAAGAACTGGCGGAGTTAA 1458695 29 100.0 37 ............................. CAAGAATTATCAACAACTGAAAAAGTGCTTGAAATCA 1458629 29 100.0 37 ............................. TCTAAGTTTCCGCTTTGTAAAGCTTGTACAAGCCAAC 1458563 29 100.0 36 ............................. TGGTTTTATCTTTTTCTAGCATAGATTCTATTTTTA 1458498 29 100.0 37 ............................. AAGATTGTACTTAGTTTAAGAAATGTAAATAGTATAA 1458432 29 100.0 37 ............................. TACAAAATTTCAAATGAATTTTGATTTAACTCTGCTA 1458366 29 100.0 38 ............................. AGGTATATCCAGTTGAAATTAAAGGAAATTGGGTAAAA 1458299 29 100.0 37 ............................. GTTGTCTTTACGCTCAAGCCGTTGTATTTAAAAAAGG 1458233 29 100.0 35 ............................. ATAAATGTAGATTAGAATTCCAAAAAAAAGTTAAT 1458169 29 100.0 36 ............................. ATTGTTTGTGAAGATTATATAGATATGAGTGATTTA 1458104 29 100.0 36 ............................. GAATGCTAAAGGATAATCTGTCTTATATCCTTGTTG 1458039 29 100.0 36 ............................. TTTTTAGATGCATAGTTTAAAGTATCATATTCTAAA 1457974 29 100.0 37 ............................. TTAGGAAGACAGAAATTACAAAGCGATAAATTAGCAG 1457908 29 100.0 37 ............................. AGATTAAATCCTATAACATGAAAATGTATTGCCCCCC 1457842 29 100.0 37 ............................. CCAAATTATTTCTAATGCATAAATCCTAATCAAACTG 1457776 29 100.0 35 ............................. TTTATTAGCCCCTTAGTCTCCTAAGGGGACTAAAC 1457712 29 100.0 37 ............................. CTACTAAAGTAGCATTTGTTCTAGTTTCATTAGATTC 1457646 29 100.0 35 ............................. GGACACGTTGCGAGTGAATATAGTTTGCCCTAGAA 1457582 29 100.0 36 ............................. GATGTATTGTAATAATATCCTTTTGGTACCACTCCC 1457517 29 100.0 37 ............................. ATGGCTATGTGGGCCTGACGAATTGCCAGTTGAGCCT 1457451 29 100.0 37 ............................. GCAGTTCCATTTACATTTCCTCCAGGAGTATCTTTTA 1457385 29 100.0 37 ............................. GACTTACAAAGAAGATAAAAAAGATATTTTATTATCT 1457319 29 100.0 36 ............................. ATACATGCGAGAATTATAATAGCCTGTATTGTAGCA 1457254 29 100.0 36 ............................. AATAAAGTCGGCATAATATTTATTATTATAAGAACT 1457189 29 100.0 36 ............................. GCACCAACTATAGGTAAAGTTACTCCCATGGTCATT 1457124 29 100.0 37 ............................. CAACTTTCTTGTATTATTAATTACAATTAGATATTAA 1457058 29 100.0 37 ............................. TAATTTCAAGAAAAGTTAACGACTTTGTCGTAAAATC 1456992 29 100.0 36 ............................. CGATTAAGTTAGCATAGTTTTCAAACACTTGTCCTG 1456927 29 100.0 36 ............................. TTAGCTTTTAATTCTTCTTGTTTTTTCACTGCATTT 1456862 29 100.0 36 ............................. AGACTTAACTGTATTGATTGATACTCCATACTTCTC 1456797 29 100.0 36 ............................. AAGAGTGGTGAAACATATAGTAACAAAGTAACTTTA 1456732 29 100.0 36 ............................. TACTGTACCAACTTAGAGTTAACTCTTTTAGCTACT 1456667 29 100.0 36 ............................. ATAGAGTTAGCTTTATTAACTCTATATCTTAAGCTT 1456602 29 100.0 35 ............................. TGCGAAATCTAAAGCAGCTCTATTTGATAGAATGC 1456538 29 100.0 37 ............................. GTAGGTATATATTGGTTTAGCTATGCTTGGAATGAAG 1456472 29 100.0 35 ............................. ATCAATTTCTTTTTGTCTTTTCCAAATAAGTCTTA 1456408 29 100.0 37 ............................. AAGAATTAGAAGATAAAATATCTAATTTAGAAGGAGA 1456342 29 100.0 37 ............................. ATATATAAATGTAAATGCGAATGTGGTAATATAGTCA 1456276 29 100.0 36 ............................. TAAAACTACTTGTACCACTTATAGCATTTTCAAAAC 1456211 29 100.0 37 ............................. CTCAAGATAACTATTTTCATCATTTCATAAGGAGTTC 1456145 29 100.0 37 ............................. TTACGATGTGTAGAAACATTGTGAAGGTGAAAGAATT 1456079 29 100.0 36 ............................. ATTAGATAAAAAAGATATTTTAATTAAAGAGCCATT 1456014 29 100.0 37 ............................. AAAGGAATATCAGATTGTAGTAGTATATCTGCTTTCA 1455948 29 100.0 37 ............................. CTTGTAAAAGTGTTTAATATTTACAAGTTGAAAGATA 1455882 29 100.0 36 ............................. AAAAATCTTTGGAGCATACCAAATGAAGAAGGTATA 1455817 29 100.0 235 ............................. AAAGCAGCTGAAAGAATTATTTCTAATATCATAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGGTTGTCATATTTAATAGTTCCAATATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATGAGTAATTTAA 1455553 28 72.4 0 ........A...GA..T.AA..-.....A | ========== ====== ====== ====== ============================= =========================================================================================================================================================================================================================================== ================== 73 29 99.6 39 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : TGGACATGCTATCTGTCCATTTTTACTTAATTATTAATATATACTTATTAAATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCGAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATTAGGGCAGATTGTTTTTATAACTTCCTTCAGTTTATTAACTGATTTAGGATCATCATTATATCCCTTAACTATGGTTATTTCAAATATGAATTTTCCATTATATTGTTTATTAAAGGAGGCCATATTTGATATGTATTCATGAAGGGTATATCCTTCAATTGGTCTTTGAACCTTCTTAAAATCTTCCTCTGTTATTACCTTTATTTCTCCAATAACTTCATCACATTTATTAGCAATCTTTATATAATCATCCTTTCCTAGGATATACCCATTAGAAAGTAGTCTTACAGGAACTCCCTTT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //