Array 1 1436-3179 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJTR01000031.1 Campylobacter fetus subsp. fetus strain HC1 NODE_23_length_3204_cov_95.047_ID_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1436 30 100.0 36 .............................. AATTTTGTATGAATGCGTTTAACAAAAATATTCCAT 1502 30 100.0 36 .............................. AAATTAATAAATATAATAAGCGATAAGGAGATTTAA 1568 30 100.0 36 .............................. AGAATGGATTCCATTTTGCGCGAGCTTGTATTTCGA 1634 30 100.0 35 .............................. CTTAAAAGTAAAATAGCAAAGACAAAAAGCAAAGA 1699 30 100.0 36 .............................. AGAGTGGGCTCCATTTTACTCAGATATGTATTTCAA 1765 30 100.0 35 .............................. GAAGATTCAGAAGTTGTAAACACATACGGATTCGA 1830 30 100.0 35 .............................. AAAGTTTAAAACAGTTGAAATGAGCTTAATAGAGT 1895 30 100.0 36 .............................. TAATCTATACTTTAAAATTATGGAAGAAGATTACGA 1961 30 100.0 36 .............................. GAGCTTTAGGTATTGATCCAAATACATTTTATCAGA 2027 30 100.0 36 .............................. TGCATCTCTTACTATCTCCTTGCAACACCTAAAAGT 2093 30 100.0 36 .............................. ATAAATGGCAGATCAAGTATATGATATGCTAAATGG 2159 30 100.0 36 .............................. TATTAGGGTATCTTTTGCTTCATCGTAATCTTCTCC 2225 30 100.0 36 .............................. GTGTACAAGAACTTGCTTTGTAAAATTTTGATTATC 2291 30 100.0 37 .............................. AGAACAAGAAGCAAAAGAGCAAGTAAAGGCTAAAAAA 2358 30 100.0 37 .............................. ATATTATATTAAATGGTTTTAGTATAGATTATAAAGG 2425 30 100.0 36 .............................. ATATGAAAGGCGGATCACAATATCGTGTTTTAATGA 2491 30 100.0 36 .............................. TATAGAACTTTTTGTTGATTTTCAAAACGGTAAAAA 2557 30 100.0 35 .............................. AAATAATACGTATAGTATCACCGTCTTTGTAGCAA 2622 30 100.0 36 .............................. CGCGCAATGGGATATTAAAATCGAGCTTGAAAAAAG 2688 30 100.0 37 .............................. ATAACTTAGATTTAACTGCAGATTTTACCATATCCCC 2755 30 100.0 36 .............................. TATTAAAAAATATGATATTGCTTATACTAATATCAA 2821 30 100.0 36 .............................. ATTGCCGAAACTAAGCCCTAATTCTACGGCTGCGCC 2887 30 100.0 36 .............................. AAATCAAATCCAAAGCGTAGCACCAAAAGAAGCGTA 2953 30 100.0 37 .............................. TTTGCCTATGATTGCTATCTTCAAAGTCAATACATCA 3020 30 100.0 34 .............................. TCCGGTTCTCCTGGTCCTGGTTCTGATGACAAAA 3084 30 100.0 36 .............................. CCGCCATCTGCGAACATTTTTAAGCCTTGCTTCTCT 3150 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 100.0 36 GTTTCAACACAAACATTGTCATTAGCAAAC # Left flank : GGAATTTTAGTTATTTTTGAGAGCGTTTTATCATTTATGCTATCTTTTTCTTTTGCACAGATATCTAAAATCTCTTTTGCGCTAAATTGCGCTATAAAATCATATAGCTTTTTTCTATGCCCCTTCCCATTTTTCCAGCCATACAGGGTGCCTGGCGAAATGCCTATTGCGCCTACTACTTCTTTATCTAGCAAAGGAATTATAGGAGTTTTGGCCCCAAAATTCTCTATTAAAAATTCCGGGTCTAAATTTTTAAAGAAAAGATATATATCTTTTTTGTAACCATCAGACCTCTTCCAACCGGCTATCGTCCCGCAAGGGATTTTTGTTATTTCAGATAGCCGTTTATCTGTTAATTTTTTTATCATTTTAATCCTTTTTTAAGTTTATTTTAAAAGTTTGCAGATATAATGCAAATATTAAATATATTGCTACAGACAATTTTGTGTTAAAAATTAGCAAACAACAACGTTATTAATTTTTATACTTCCAATACCGCC # Right flank : CATCGGATATGGCTTTTTAGTTTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAACATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 44633-46970 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJTR01000030.1 Campylobacter fetus subsp. fetus strain HC1 NODE_9_length_46995_cov_109.99_ID_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 44633 30 100.0 36 .............................. CCTTTTTTAAAGCTGCTTATTGCTCCAGCACTTACT 44699 30 100.0 34 .............................. TTTTCAAACCTAACGACGTATATAGCGCCTTCGC 44763 30 100.0 35 .............................. GAAATACAAATATCTGCAGGAAGTGTTTTAGATAA 44828 30 100.0 36 .............................. TCGAATAAGTTGTTAAGATTATGCAACTTTTTTGTA 44894 30 100.0 38 .............................. CCGGATTCTACTTTGATAAAAAAGGCCTTGGATGCTAT 44962 30 100.0 35 .............................. TTTTATAAATCATATCACGCTTAGCCTTATTAATT 45027 30 100.0 36 .............................. TCTTCTAAAGCAGAAACTAAAAAGCCATATCCGATG 45093 30 100.0 34 .............................. TCATTTTTGTCATCAGGACCAGGAGAACTGACAC 45157 30 100.0 36 .............................. CCGTAAGCTACATTGTAAGCTAAGTCTTCAAAGACT 45223 30 100.0 36 .............................. TATAAAGGGACCTACGAACTAAGCTAGAACCCTTTT 45289 30 100.0 36 .............................. TCGAGTATCGGTTTCAATTTTATTCCTTTGTAATTA 45355 30 100.0 36 .............................. ACGACTTAGTGCTGTACATTCAAATACAAATAATTT 45421 30 100.0 36 .............................. TTTTTATAAGGCTCATTTTTGAAGATATTATGCTGC 45487 30 100.0 36 .............................. TTTACCAATTTCTATTACTACCGCGTTCACCGGTAT 45553 30 100.0 37 .............................. TCCAGAGCTAATAAGGGATTTAGAGCAGCTAAAAACT 45620 30 100.0 36 .............................. TTTTTATAAGGCTCATTTTTGAAGATATTATGCTGC 45686 30 100.0 36 .............................. TTTACCAATTTCTATTACTACCGCGTTCACCGGTAT 45752 30 100.0 37 .............................. TCCAGAGCTAATAAGGGATTTAGAGCAGCTAAAAACT 45819 30 100.0 36 .............................. TTTTTATAAGGCTCATTTTTGAAGATATTATGCTGC 45885 30 100.0 36 .............................. TTTACCAATTTCTATTACTACCGCGTTCACCGGTAT 45951 30 100.0 37 .............................. TCCAGAGCTAATAAGGGATTTAGAGCAGCTAAAAACT 46018 30 100.0 36 .............................. TTTTTATAAGGCTCATTTTTGAAGATATTATGCTGC 46084 30 100.0 36 .............................. TTTACCAATTTCTATTACTACCGCGTTCACCGGTAT 46150 30 100.0 36 .............................. TCCCCGTTATCTACCTCTGGCGCCATGCTCTCTCCG 46216 30 100.0 36 .............................. TTTGAAGTGCACGACGCTATAACTAGAACACGGATC 46282 30 100.0 36 .............................. ATTAAAGCCGAATTACTCCCATTTTTTTTGACTTGG 46348 30 100.0 36 .............................. GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC 46414 30 100.0 36 .............................. TACATCTTTTATCTCCTCTTTGTATTCCTTTAGCTC 46480 30 100.0 36 .............................. TCACCAAAAAAACCAGGAATTAAATAAAAAGTAAAA 46546 30 100.0 36 .............................. TAGCTAGAAAATGTAAAATGCTCCCATCCTTCTACC 46612 30 100.0 35 .............................. AATCCAACTTAACAAAAATGTTATATAAAATCACC 46677 30 100.0 36 .............................. TAAGCAAGGCTTATAAGCTCTTTACAATGCATTTTT 46743 30 100.0 36 .............................. AGAACTGTTTTAACCTCACTTCCATCAATCTCTTTT 46809 30 96.7 36 .........................T.... CAGTATGCCATTTGATTCTAGTTCGCCTATAGCTCT 46875 30 100.0 36 .............................. CATCCTCCTTTTAATTTATTACATTTAAACAATTTA 46941 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 36 30 99.9 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AATATAATTTTTTGTATAATCCAACTTCTATTTTATAGTTATTTATTACTCTAAGCCTAAATGGTGAAATTGGTAGACACGCTAGACTCAAAATCTGGTACGGGAAACCGTGTGTCGGTTCGAGTCCGACTTTGGGCACCAGGGGTTTTGTATATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCCTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : AAGAGCAAACATGGCAGAGACCTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //