Array 1 412076-412502 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019720.1 Streptococcus mutans strain NBRC 13955 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 412076 32 100.0 34 ................................ TGCATTTGTTAGTTGATTATCTCGACCTGTCCCA 412142 32 100.0 35 ................................ AATTTGAAATGTCTATCCAATCAGAAGATTTATCA 412209 32 100.0 33 ................................ TACAGTGCGACTGACTGCAGTAATAAACACTAA 412274 32 100.0 35 ................................ AGAGCTCGAAAAGAGCATAACTAACCCAACAACAA 412341 32 100.0 33 ................................ ACTGAAAAAGAATTACCAAGCAGTAATCATTGA 412406 32 100.0 33 ................................ AAGATGGCTGGAATATGAAGGAGAGGTAGAAAG 412471 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 7 32 100.0 34 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TAAAGCTATTCGTGGAGAATTAGAATCTTATCCACCATTCTTAATCTAGGAGCAAATTTATGATGGTTTTAGTGACTTATGATGTCAATACGGAGACTGTAGCAGGAAGGAAACGACTACGACATGTCGCAAAACTCTGTGTTGATTATGGTCAGCGTGTGCAACATTCGGTTTTTGAGTGTTCAGTGACACCAGCCGAATTTGTAGAGATTAAAAATGAACTCTCAACAATCATTGACCAAGAATCAGACAGCATCCGATTTTATTTACTTGGCAAAAATTGGCAAAATCGGGTAGAAACGATGGGCCGAGATGACAGTTATGACCCCGATGTGGGGATACTGCTTTTATAAAAATTTGTGTGCGAATCTGGGTTGCACATCAAAACCAGAGACATTCGCGCACAAAACCAGAACTATAGTGATAAAAATTCAGTTTTTATTGAGCCAATTGGTTTAATAAATTCTCGATTTTAGTCACAAACGGTGCAACTACGCGCC # Right flank : TTTCAAAAAATCCTGAAATAAACACTTCTGGTTTTTGTCGCACCCTTTAAAGGTTGGGTTTGTTTTTTAGTATAATAAAAGATAATAAAGGTGGAGAATTTTTTATAAAAATGTCTGGCACTGATTTTAACAAAGGAAAGAGTTCGTCCATGAAAGCAACATACAACATTGATAATCCCAATTTACCTTATCAGACCAACCTTGAACTTTGGCAGACAAGTTTTGGTCTTTCAGCAGGTGGATGGCTTAACGCCATCAGCTTATATGGAAGAATTGGCTGAGAAGCAGGCGCATGGAGATTATTCTTATGAATAGGTCTATGAGGGAATCATTGATTATCACAAATCAACGGATGACAGCACGGCTGAGGCTGATTTGGTTTCCTTGCGTATTGCATAGCATCGGGTTTAGCTTTAGTCCAGCTATCTTGCTGACAATTTGGTGTGAACTGTTTCAGAATATTTTTGGTTGTTCCATTCTCATTGGTTAGTTTCGTCAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 741871-742104 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019720.1 Streptococcus mutans strain NBRC 13955 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 741871 36 100.0 30 .................................... GAAAAGCCAGCTCAAGACGATAATCTTGAG 741937 36 100.0 30 .................................... CTGTTAATTCAAACTCATGTAACACAGGCT 742003 36 97.2 30 ...................................T CGGCATATATAATCCGTAAAGGCGGCACAT 742069 35 75.0 0 ..........CA.......A.TG..-T.A.T..... | A [742085] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 93.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGGAAGAGGAAGGGTATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTATTGGCCTCCTATCTAGATGAGGGAATGAAACTGCCTAATCCAAGTGAGATAAGGAAACTATCTGTTGAAGATGGCTTTGCAACTATGATTCAAGCAGATCCTAATCCTTATCTCAAAAATAACAAAGCTATTCGAAAGAATGTTACCGTACCTGAGTGGCTAGTACAATTAGCAGATCGTGATCAAGTGAATTATTCTGAAGTATTAACAAAGGCTTTGGAAAAGAAACTACAATTATAAAACAATAAAATCGCTAGAAAGATTGATTTCTAGCGATTTTTGAGGTATAATATAAGCAATCAAAACCTTTTAAAAAGGAATTATTTGAAGCTGAATTCTAGCTGAGATGAATGGCGCGATTACGAAATGTCGTGACGAAAATTGGTCCACGAG # Right flank : CGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTTTCGTATTGACGTCCAAAGGTTTGATACAAATCCTTAGCTTTTATCACATTATCCCAATGAATAAT # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //