Array 1 13122-14736 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBIZ010000044.1 Escherichia coli strain C49 Sample_C49_R1_contig_44_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13122 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 13183 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 13244 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 13305 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 13366 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 13427 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 13488 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 13549 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 13610 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 13671 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 13732 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 13793 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 13854 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 13915 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 13976 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 14037 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 14098 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 14159 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 14220 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 14281 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 14342 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 14403 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 14464 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 14525 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 14586 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 14647 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 14708 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30238-30754 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBIZ010000044.1 Escherichia coli strain C49 Sample_C49_R1_contig_44_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30238 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 30299 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 30360 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 30421 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 30482 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 30543 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 30604 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 30665 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 30726 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GAGGCCTATATCTCTAACCGCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //