Array 1 562582-563799 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017982.1 Lactobacillus helveticus strain LH99 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 562582 30 100.0 35 .............................. AATGCAATTAATGGAGCTATCGAAAAATACGTTAA 562647 30 100.0 36 .............................. CGATACTTGTTAAGCCAGCTATTAAGTGGCTAGACG 562713 30 100.0 36 .............................. TGTTGGTAAAAAGTTTAAGAATGTTGCGTCCTTTGA 562779 30 100.0 35 .............................. AAAGCTAATAAGGGCTATAGAAGCGTCTTTACTAA 562844 30 100.0 36 .............................. TACTAAATTAAATATTTAATAGGCAAAAGCTGATTG 562910 30 100.0 36 .............................. TGATTCAAGGGCCAACTACTAAATGGCTGATAGACC 562976 30 100.0 35 .............................. TGTTAGTCCTATGACTATTCAGCATATTAGAACTG 563041 30 100.0 37 .............................. GTCATAAAAAATCGACAGTAAGATGCACTGAGGCTGA 563108 30 100.0 36 .............................. ACCCAAGTAAAAATGGAGCTAGTACACTAAGTATGT 563174 30 100.0 38 .............................. CTTAAACAGCAGGCAGCATGATGATTTCATTGCAAGTG 563242 30 100.0 36 .............................. TACTTTGGCGAGATGGGACTAACTAACATTTTAACC 563308 30 100.0 36 .............................. ATGGAGCGTATATGGGGCTTCAGATGACGGCTTTTT 563374 30 100.0 36 .............................. AGTAAATCAACACGTGCTTGGGAATTGATTGGAAAA 563440 30 100.0 35 .............................. GTTTTCCATAGTCTGTTCTTTCATACTTACTAATC 563505 30 100.0 35 .............................. GAACAACCAGTAGAGTCAACTCAACCAGAACAGCT 563570 30 100.0 36 .............................. AAACTTGAATGATCTATAGTACCTCTTTTTGAGTGA 563636 30 90.0 38 ............T.............G..T TTTTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 563704 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 563770 30 76.7 0 .A......C...........G..AA...TT | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 97.4 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : CCTATGAGCCTTATGTTATGGGATGGTAATAGATATGTATGTGATTCTGGTTTACGATATCGTAATGGATAAACAAGGTGCTAAAGTAAGTAGACATGTTTTCAAAATATGTAAAAAGTATTTAACTCATGTTCAAAATTCAGTATTCGAAGGTGAACTAACCAAGTCCCAGCTTGAAAGCTTGAAGAATGAGTTGGATAGATGGATTCGACAGAACGTTGATTCAGTGATTATATTCAAAAATAGAAATAAAGATTGGCTTGATAAAGAATTTATGGGTCAGGATTTAACTGATTTAACGTCGGATATATTCTAAAGAAGAATCTGTCGATGTAAGATACGAAGAAAATCCTGGGAGATCGACAGATTTGCAAAATGCCGGTACAATGATATTTGTGCGATTTGTCTAATGATTTTAGTGATTTTTGGATGCGTTTTTGGTTAGGTCGACAGATAGGGCCGTTGAATCTATTGATACAGTAGGACTGGTAGTTGCAACT # Right flank : TGTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATGAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGACGGTCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCA # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 679887-681012 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017982.1 Lactobacillus helveticus strain LH99 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 679887 29 96.6 32 ............................T CCAACTAAGTTCTTACAAGAAAGCTTTGCTAC 679948 29 96.6 32 ............................T AAAAATGGAGAACGAGAAGCAGATTTCATCAG 680009 29 100.0 32 ............................. GGCAAAAATAAAGAAATGGCTGCATTAAAGGA 680070 29 100.0 32 ............................. ACGTGCCCTATTTCATGAGCAAATAGGAAAGG 680131 29 100.0 32 ............................. AGCAGGCTAAGTTAAAAGAGCAAGCGTCTAGA 680192 29 100.0 32 ............................. ATTTTTTTAATTACTGATTTAACCATTTTTTA 680253 29 96.6 32 ............................T AAAACAATATGAATCCGATCAATTTGGAGAGG 680314 29 100.0 32 ............................. CACACTCAAGCATTTTTCAAAAAGCACAATGC 680375 29 100.0 32 ............................. AAAAATGTTAGAACAAGAATATTTTACCAAAG 680436 29 96.6 32 ............................T CCGTGTTAATGTTTACATATGAAAGCAAAAAA 680497 29 96.6 32 ............................T TCTTGAGCTACGATTTTGCTAAAACTGATTGA 680558 29 100.0 32 ............................. AAACATTTCCGCATTTTTTGGCAACATCTTAA 680619 29 96.6 32 ............................T TCTTGAGCTACGATTTTGCTAAAACTGATTGA 680680 29 100.0 32 ............................. CAATACACGCAATCTTTTATGGAACTCCAGGC 680741 29 96.6 32 ............................T TGGAGAAACCATTCAACAAATAAGACAGTTAG 680802 29 96.6 32 ............................T AATTCACAAGTACGGCTGAAAGTTGGCATGAC 680863 29 100.0 32 ............................. AACAAAGCTGTTATGGCGATTATGGACATGGA 680924 29 100.0 32 ............................. GTTAAGAATGGCAATATTCAAAAAATGTCATT 680985 28 79.3 0 .....................-CA.C.AA | ========== ====== ====== ====== ============================= ================================ ================== 19 29 97.5 32 GTATTCTCCACGTATGTGGAGGTGATCCC # Left flank : TACTAGTTAAGTAGTGATATCCCTTTTTAGCTTGATGATCAACTTGAGTTAAAGCAGCATCCTTGTAAATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTAATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATCGCTAACAGCATCGGCTTGAACGTGATTAGTAGAAACAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAAAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : AAAACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCAAACAAATTCAACATCAACATTTTTTACTTCTGGCACTTTTTTAACTGCCTGAGTAATGCTATCAATTAGGTAGCCAGTTAACGGACAAGTAGGGGTAGTCAAAGTCATATTGATTAAACAGATTCCATCTTTGTCCAGATCGATTTCATAAATTAAACCTAGATTGACTACATCAAAATTCAATTCTGGATCGATAACTGTCGCCAATTGATTGATAATATCGTTTTTAATTGTTTCACCGTCACGCATTTTATCACGCATCCTTGCCAAAAATTTTAGCTTTGATTGCTTGGCCGGTTGGAGTACCAGCTAAGCCGCCGATTCCGGTCTCACGCAGGGATGCTGGCATTTGATGACCAACTTTTTTCATAGCATCGATACATTCGTCGGCTGGGATCA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //