Array 1 312931-313750 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMLZ01000031.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 607309-34 SEEH0934_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 312931 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 312992 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 313053 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 313114 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 313175 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 313236 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 313297 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 313358 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 313419 29 100.0 31 ............................. AACAGGAACAGGAAAAAAAGATTTGTCCGGT 313479 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 313540 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 313601 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 313662 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 313723 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 330009-331672 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMLZ01000031.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 607309-34 SEEH0934_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 330009 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 330070 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 330131 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 330192 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 330259 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 330320 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 330381 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 330442 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 330503 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 330564 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 330625 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 330686 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 330747 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 330808 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 330869 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 330930 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 330991 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 331052 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 331113 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 331174 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [331216] 331216 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 331277 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 331338 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 331399 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 331460 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 331521 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 331582 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 331643 29 96.6 0 A............................ | A [331669] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //